Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2433 ATGGCACACACTCCCAGTCCCAGAGACATTCCCTTCCACCTATACTCAACCTCGAGTTCTTTATTTGGCCCCAAAAAAAAAAAAAAAGAAGACAAAACCAAAAACAAAACCTCGAGTTCTTTAAACACCCAGGAAGAAGTCACTGTAGATCCCCACAAGATGTTTGATCAGCATGCTATGGAATATTGTCATTCAGCAGCAGCTGCGGAAGCAGAAGCCTATAGCAGCACAGATCCATCAGGAGGAGGAGTACTCACGAGGAAGAGGAAGGGAAGCAAAATCCAGAGAAGGTTCAGTGATGACCAGATCAGATCGTTGGAATCCATGTTTGAGACAGAGTCAAGGCTTGAGCCGAGGAAGAAGGTGCAGCTGGCAAGAGAGCTCGGGTTGCAGCCAAGGCAAGTTGCTATATGGTTCCAGAACAAGAGGGCGAGATGGAAGTCCAAGCAGATTGAAAGAGACTACAGCATACTAAGAGCTAGTTATAGCAGCTTGGCTTCCAGGTTCGAAGCTCTGAAGAAGGAGAAGGAGGCATTGCTAATTCAGAAGTCAATGACTCTAGTTTCAATGTCAAAGCAGTTGCAGAAGCTGAATGGTCAAATACAGAAGCCAAACGAGCAAGCTCAGTGCTGCACGCAAGCCAAACCAGCAAACAGCATGGACAGTGTATCAGAAAATGGAGACACCGCTAGAGCAAAACCTGAGGAAAATCCGAGCTCAACAATGGAGCGATCAGAGCACGTACTGGGTGTTCTCTCAGATGATGACAGCAGCATAAAGGCAGAATACTTTGGCCTTGAAGATCAACCTACTCTTCTGAATTTTGTCGAGCAAGCAGATGATTCCCTGACTTCAGCAGAAGATTGGCGTTCTTTTGATTCAGATGAACTCTTAGACCAGTCTCCTGCTGGTTACCAGTGGTGGGACTTCTGGTCCTGA 939 0.4654 MAHTPSPRDIPFHLYSTSSSLFGPKKKKKEDKTKNKTSSSLNTQEEVTVDPHKMFDQHAMEYCHSAAAAEAEAYSSTDPSGGGVLTRKRKGSKIQRRFSDDQIRSLESMFETESRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQIERDYSILRASYSSLASRFEALKKEKEALLIQKSMTLVSMSKQLQKLNGQIQKPNEQAQCCTQAKPANSMDSVSENGDTARAKPEENPSSTMERSEHVLGVLSDDDSSIKAEYFGLEDQPTLLNFVEQADDSLTSAEDWRSFDSDELLDQSPAGYQWWDFWS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2433 312 SMART HOX_1 92 153 IPR001356 GO:0003677
Prci12g2433 312 CDD homeodomain 93 150 IPR001356 GO:0003677
Prci12g2433 312 Gene3D - 80 152 - -
Prci12g2433 312 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 83 243 IPR045224 GO:0003700
Prci12g2433 312 MobiDBLite consensus disorder prediction 207 244 - -
Prci12g2433 312 SUPERFAMILY Homeodomain-like 76 150 IPR009057 -
Prci12g2433 312 Pfam Homeodomain 96 147 IPR001356 GO:0003677
Prci12g2433 312 MobiDBLite consensus disorder prediction 70 93 - -
Prci12g2433 312 MobiDBLite consensus disorder prediction 228 244 - -
Prci12g2433 312 PRINTS Lambda-repressor HTH signature 120 129 IPR000047 GO:0003677
Prci12g2433 312 PRINTS Lambda-repressor HTH signature 129 145 IPR000047 GO:0003677
Prci12g2433 312 ProSitePatterns 'Homeobox' domain signature. 124 147 IPR017970 GO:0000981|GO:0006355
Prci12g2433 312 MobiDBLite consensus disorder prediction 1 50 - -
Prci12g2433 312 MobiDBLite consensus disorder prediction 207 226 - -
Prci12g2433 312 Pfam Homeobox associated leucine zipper 149 182 IPR003106 GO:0006355|GO:0043565
Prci12g2433 312 FunFam Homeobox-leucine zipper protein ATHB-7 79 149 - -
Prci12g2433 312 ProSiteProfiles 'Homeobox' domain profile. 89 149 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2433 Prci-Chr12 41985841 41987446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2433 95 312 Homeobox Transcription Factor Family AT2G46680 52.542 1.09e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci12g2433 Homeodomain 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2433 K09338 - qsa:O6P43_027419 320.472