Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2431 ATGGACGACCTCCTCCTCTCCTCCTCTCACTCTTCCCCGCCCTCCTCTCCCCTCCACCACAAGCTCCAGTTCTTGCTCCAGGCCCTGCCCCACTCCTGGCTCTACGCCATTTTCTGGCAAACCTCCCACGACGACCGCGGCCGCCTCCGCTTGTCCTGGGCCCACGGTCACTTCCACGGCTCCGTCCACCGCCTCGAATCCCTCCTCGACGACAACCTCAACGACGCCGAGTGGTTCTACGTCATGTCCTTGACTCGTACTTTCTCCCTCGCTCCCGATTCCTCCGCCTCCTCCCTCCCTGCAAAGGCTTTCTCCTCCGCTTCTCCCCTTTGGTTGAACATCACCCAGCCCGACCTTCCCTTTCCCTCCTGCGACAGGGCCAGGGAAGCTTCCCTGCATGGCATTCGAACCCTCATCTGCGTTCCCACCAATCACGGAGTCCTCGAAATGGGTTCGTCCGAGATCATCCCCAGGAGCCCCGCCATCATCCAGCAGGTCAAAACTCTCTACGGCTCTTCTCATCTCTCCCCCGTCGTCTCCCCCTCTCACAAGCAGCCCGAACCAGTTGATTTCTTGGACATCGACGACACCATTTCTTTTGCCGACATCGGCATTATCGCCGCCACTCCGGAAGTAAAGGATGAAAAAGCACCCGACAGTTCCTGCAGCAAGTCCCGGAACAAAGACACCTGTCTCCAGTTCAGGGTGGATTCCGAGCATTCGCATTCGGATTCGGACGGTCCGGTGATAGAAAAAACACCGCCCAAGAAGAGAGGACGGAAGCCCGGGCTGGGTCGCGAGACGCCGCTGAACCACGTGGAGGCGGAGCGGCAGCGCCGGGAGAAGCTGAACCACCGGTTCTACTCGCTACGCGCTGTGGTCCCGCACGTGACGAGGATGGACAAGGCGTCACTGTTATCGGACGCCGTCTCTTACATCAACGAGCTCAAGTCCAAGATCGAGAAACTGGAGTCGCAGCTCCGGAGGGAGCCCGCCAGCACGAATAGTTGTAGGAGGGTGAAGCTGGAAATGACGGACACGGTGGAGTCGACGGTGGAACAAGCCGGCCCCGGCGGAAGGGGCTTGAGGCTGGGGCTAGAGGTTGATGTCAGGATCATAGGGCCGGACGCGATGGTCAGAGTCCAATCGGAGAACAGGAACCATCCCGGAGCGAGGCTGATGGACGCGCTGCGCGACCTGGAGCTTCGGGTGCACCACGCCAGCATGTCGTGCGTCAACGAGGTAATGCTCCAAGACGTCGTGGTGAAGATCCCTCAAGGCTTGAGAAGCGACGAGGGCCTGATTAAATCTGCTATCCTCAGGAGACTGGATCAGTAG 1338 0.5987 MDDLLLSSSHSSPPSSPLHHKLQFLLQALPHSWLYAIFWQTSHDDRGRLRLSWAHGHFHGSVHRLESLLDDNLNDAEWFYVMSLTRTFSLAPDSSASSLPAKAFSSASPLWLNITQPDLPFPSCDRAREASLHGIRTLICVPTNHGVLEMGSSEIIPRSPAIIQQVKTLYGSSHLSPVVSPSHKQPEPVDFLDIDDTISFADIGIIAATPEVKDEKAPDSSCSKSRNKDTCLQFRVDSEHSHSDSDGPVIEKTPPKKRGRKPGLGRETPLNHVEAERQRREKLNHRFYSLRAVVPHVTRMDKASLLSDAVSYINELKSKIEKLESQLRREPASTNSCRRVKLEMTDTVESTVEQAGPGGRGLRLGLEVDVRIIGPDAMVRVQSENRNHPGARLMDALRDLELRVHHASMSCVNEVMLQDVVVKIPQGLRSDEGLIKSAILRRLDQ 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2431 445 CDD bHLH_AtAIB_like 265 326 - -
Prci12g2431 445 MobiDBLite consensus disorder prediction 236 270 - -
Prci12g2431 445 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 18 60 IPR025610 -
Prci12g2431 445 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 66 169 IPR025610 -
Prci12g2431 445 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 267 316 IPR011598 GO:0046983
Prci12g2431 445 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 268 334 IPR036638 GO:0046983
Prci12g2431 445 Gene3D - 265 330 IPR036638 GO:0046983
Prci12g2431 445 PANTHER MYC 14 442 IPR045084 GO:0003700|GO:0006355
Prci12g2431 445 Pfam Helix-loop-helix DNA-binding domain 271 316 IPR011598 GO:0046983
Prci12g2431 445 Coils Coil 306 333 - -
Prci12g2431 445 SMART finulus 273 322 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2431 Prci-Chr12 41886364 41888974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2431 18 424 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 34.160 3.19e-89 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci12g2431 bHLH-MYC_N 1.2e-31 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2431 - K13422 pcin:129288951 834.713