Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2423 ATGTCGGAAGGTGCAGAAGTTGATGAGCGTGTGGACTTTGATGAGGAAAACTACATGGAAGAGATGGACGATGATGTGGAAGAACAAATATATGATGAGGGAGTAGATGGAGGTGGTGACGAGAATGAAGAGAATGTTGAGGAACATGAATATGAAGATTCAGTAGCAGAAACTTGTGGGAAAGACCAATATCCTGAAGCAGATGGAAGTGACATTGTAACTGAATCTGTGGAAAATGAGCAAAAGCCATCTTCCATTGATGAAAATGAAAAGGAGAAGCATGATGAACTTCTTGCACTTCCTCCTCATGGTTCTGAAGTCTTTATTGGTGGACTTCCTCGAGATACATGCGAAGATGATTTAAGAGAAATGTGTGAGCCAATTGGTGATATTCTTGAGGTGAGACTTATGAAAGATAGGGATACAGGAGATGTTAAGGGTTATGCTTTTGTGGCATTTAAAACAAAAGAGATTGCACAAAAGGCCATTGAAGAGCTACATAACAAGGAATTTAAGGGTAAAACTTTAAGGTGTTCTGTGTCTGAAACGAAACACAGATTGTTTATTGGTAATGTTCCAAAAAACTGGACAGAGGATGAGTTTAGGAAAGTCATCATGGGTGTTGGTCCTGGAGTTGAAAACATTGAGCTGATTAAGGACCCCCAAAATGCAAGCAGGAATCGTGGGTTTGCTTTTGTTTTGTATTATAATAACGCCTGTGCTGATTATTCTCGAAAAAAGATGTCAAATGCAAACTTTAAGCTGGATGGTAATACCCCGACTGTCACATGGGCAGATCCAAAGAACTCATCTGATCATTCGGCATCCTCACAGGTTAAAGCTCTCTATGTGAAAAACATACCTGAGAATACTACTACTGAACAACTGAAGGAACTGTTCTGTCGACATGGAGAAGTAACAAAAGTGGTCATGCCTCCTGGGAAATCTGGAGGCAAACGTGATTTTGGTTTCATTCATTTTGCAGAGAGGTCAAGTGCATTGAAGGCAGTAAAAGATACAGAAAAATATGAAATAGATGGCCAAGTGTTGGAAGTTGTTCTAGCAAAGCCTCAAACCGAGAAAAAATCTGATGGAGGTCATGCCTACAATCCTGGGCTCCATCCACATCCTGGTTATGGTGGTTTCTCGGGAAATCTATATGGTTCTGTGCGGTCTGGATATGGCGTTACTGGTGGTTATCAACAACCGGTGATATACGGTAGGGGTCCTATGCCAGCAGGAATGCAGATGGTCCCCATGGTATTACCTGATGGTCGTATCGGCTATGTCCTTCAACAGCCTGGTGCACAGATTTCAGCACCCCGACCCCGCAGGAACAATGGTCCAAGCAGCCAGCCAGGGCGAGGTGGAGGCAGTGGCAGTGATGAGGGCAATCGCAGTAGAAGGTATCGACCTTATTAA 1422 0.4297 MSEGAEVDERVDFDEENYMEEMDDDVEEQIYDEGVDGGGDENEENVEEHEYEDSVAETCGKDQYPEADGSDIVTESVENEQKPSSIDENEKEKHDELLALPPHGSEVFIGGLPRDTCEDDLREMCEPIGDILEVRLMKDRDTGDVKGYAFVAFKTKEIAQKAIEELHNKEFKGKTLRCSVSETKHRLFIGNVPKNWTEDEFRKVIMGVGPGVENIELIKDPQNASRNRGFAFVLYYNNACADYSRKKMSNANFKLDGNTPTVTWADPKNSSDHSASSQVKALYVKNIPENTTTEQLKELFCRHGEVTKVVMPPGKSGGKRDFGFIHFAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTEKKSDGGHAYNPGLHPHPGYGGFSGNLYGSVRSGYGVTGGYQQPVIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGAQISAPRPRRNNGPSSQPGRGGGSGSDEGNRSRRYRPY 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2423 473 CDD RRM_SF 107 179 - -
Prci12g2423 473 Gene3D - 186 266 IPR012677 -
Prci12g2423 473 MobiDBLite consensus disorder prediction 8 51 - -
Prci12g2423 473 Gene3D - 14 185 IPR012677 -
Prci12g2423 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 183 IPR000504 GO:0003723
Prci12g2423 473 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 13 458 - -
Prci12g2423 473 MobiDBLite consensus disorder prediction 439 458 - -
Prci12g2423 473 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 186 266 - -
Prci12g2423 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 357 IPR000504 GO:0003723
Prci12g2423 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 267 IPR000504 GO:0003723
Prci12g2423 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 253 IPR000504 GO:0003723
Prci12g2423 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 177 IPR000504 GO:0003723
Prci12g2423 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 350 IPR000504 GO:0003723
Prci12g2423 473 SUPERFAMILY RNA-binding domain, RBD 102 270 IPR035979 GO:0003676
Prci12g2423 473 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 185 - -
Prci12g2423 473 SMART rrm1_1 106 179 IPR000504 GO:0003723
Prci12g2423 473 SMART rrm1_1 281 353 IPR000504 GO:0003723
Prci12g2423 473 SMART rrm1_1 186 263 IPR000504 GO:0003723
Prci12g2423 473 SUPERFAMILY RNA-binding domain, RBD 275 382 IPR035979 GO:0003676
Prci12g2423 473 MobiDBLite consensus disorder prediction 433 473 - -
Prci12g2423 473 MobiDBLite consensus disorder prediction 1 92 - -
Prci12g2423 473 Gene3D - 268 401 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2423 Prci-Chr12 41801186 41815466 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2423 107 449 Eukaryotic Initiation Factors Gene Family AT2G23350 26.357 7.48e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2423 K13161 - gmx:100790907 763.837