Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2420 ATGGGGAAGAAGAAGGGAGGTAGCTCATGGTTGAGTGCCGTGAAAAGGGCCTTCAGATCTCCAACCAAAGAGCAAGTCGACGAGGACAAGAAAAGAGAAAAACGAAGATGGATCTTCAGAAAGCCAGTCGTAAACCATGAATCACCGAGTTCCCAGCAAACCCCGGCAGAGCAGAAGTCGGATGCAGCCGAGGTAGCCACAGATCAAAAGCACGCGCTGGCTGTGGCGGTCGCCGCCGCCGAGGCCGCCATGGCCACTGCTCAGGCGGCTGTGGAAGTGGCCAGACTTACCATACCACCTAATCATACTACGGAGCACGACGCTGCTATTGTGATTCAGACTGCTTTCAGAGGATATTTAGCAAGAAGGGCTCTTCGAGCGCTGAAGGGGCTGGTGAAATTGCAGGCATTAGTGAGGGGCCACAATGTTCGGAAGCAAGCGAAGATGACGCTTCGGTGCATGCAGGCTCTGGTTCGAGTCCAAGCTCGGGTGGTTGACCGGCGCGTGAGGTTGTCACACGACGGAAGCAGTAGAAAATCCACGTTCAGCGACACCAACAGTCTCTTGGAATCCCGTTATCTTCAGGATATCTCAGATAGAAGATCAATGTCAAGAGAAGGAAGCAGTGTTGCAGACGATTGGGATGAAAGGCCACACACGGTTGAAGAAATTAAAGATATGTTGAGGCAGAGGAAGGAGGCAGCTTTGAAGCGAGACAAGTCCTTGTCTCAAGCTTTCTCTCAACAGATTTGGCGAAGCGGAAGAAGGCCATCCATTGGGAACGAAAAGGAGATGGAAGAGAGGCCGGCGTGGCTGGAGCGGTGGATGGCGGCGAGGCCATGGGAGACGAGGGGAAGAGCTTCAGTTGATCAGAGAGACGCCATCAAGACAGTAGAAATGGACACATCTCGTCCTTACACATCATATTTAGGATCTAACTACAGAAAATCACACCCAAATTATCAATATAACCCACACCAACACCAACCTCAAAGACACTCAGTAGCTTCACCATTTCACAGAACAGGATCATCATCATCTCTTCACCATTCCTCTGCAACCCCTTCTCCTGCAAAATCCCAGCCAGTCCAGGTCCGGTCGGCGAGTCCTCGCTGTGGAAGGGAAGACAGAAGCTTCCATAGTACATCTCAAACACCAAGCTTGAGGTCCAACTATCATTACACGGGAAGCTTGTACCAGACGGGAAGAGGTGGAGGTGGAAGCAGCCATAGTGGCGGTTCTTCGTTGCCTAATTACATGGCAGCAACCGAGTCTGCGAAGGCTAGGATTCGGTCTCTGAGTGCACCGAGGCAGAGGCCTTCAACATCAGAGAGAGACAGAGTTGGGTCAGCAAAGAAGAGGCTTTCTTTCCCTGCTCATCCTGGGGATGCTTATGGTCGTGGTGGTTATGTTGGTTATGGTAGTTTTGGGCATAGCCTGAGGAGTCCGAGCTTTAAGAGTGTGAGCGGGTCACGGTATGGGATGGATCAAGTTTCCATCTATTCTTCTTGCTGCACAGAGAGCCTTGCTGCTGCTGGTGACATGTCTCCTTCTTCAACTGGTGATCTTAGAAGGTAG 1578 0.5146 MGKKKGGSSWLSAVKRAFRSPTKEQVDEDKKREKRRWIFRKPVVNHESPSSQQTPAEQKSDAAEVATDQKHALAVAVAAAEAAMATAQAAVEVARLTIPPNHTTEHDAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVVDRRVRLSHDGSSRKSTFSDTNSLLESRYLQDISDRRSMSREGSSVADDWDERPHTVEEIKDMLRQRKEAALKRDKSLSQAFSQQIWRSGRRPSIGNEKEMEERPAWLERWMAARPWETRGRASVDQRDAIKTVEMDTSRPYTSYLGSNYRKSHPNYQYNPHQHQPQRHSVASPFHRTGSSSSLHHSSATPSPAKSQPVQVRSASPRCGREDRSFHSTSQTPSLRSNYHYTGSLYQTGRGGGGSSHSGGSSLPNYMAATESAKARIRSLSAPRQRPSTSERDRVGSAKKRLSFPAHPGDAYGRGGYVGYGSFGHSLRSPSFKSVSGSRYGMDQVSIYSSCCTESLAAAGDMSPSSTGDLRR 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2420 525 MobiDBLite consensus disorder prediction 305 367 - -
Prci12g2420 525 Pfam IQ calmodulin-binding motif 132 148 IPR000048 GO:0005515
Prci12g2420 525 Pfam IQ calmodulin-binding motif 106 126 IPR000048 GO:0005515
Prci12g2420 525 ProSiteProfiles IQ motif profile. 129 156 IPR000048 GO:0005515
Prci12g2420 525 MobiDBLite consensus disorder prediction 305 460 - -
Prci12g2420 525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 149 IPR027417 -
Prci12g2420 525 SMART iq_5 104 126 IPR000048 GO:0005515
Prci12g2420 525 SMART iq_5 127 148 IPR000048 GO:0005515
Prci12g2420 525 PANTHER IQ-DOMAIN 5-RELATED 1 459 - -
Prci12g2420 525 MobiDBLite consensus disorder prediction 20 35 - -
Prci12g2420 525 MobiDBLite consensus disorder prediction 45 60 - -
Prci12g2420 525 FunFam IQ-domain 11 104 155 - -
Prci12g2420 525 MobiDBLite consensus disorder prediction 379 421 - -
Prci12g2420 525 Pfam Protein of unknown function (DUF4005) 369 461 IPR025064 -
Prci12g2420 525 Gene3D - 103 167 - -
Prci12g2420 525 ProSiteProfiles IQ motif profile. 105 133 IPR000048 GO:0005515
Prci12g2420 525 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2420 Prci-Chr12 41753906 41756697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2420 10 525 IQD Protein Family AT4G00820 53.237 1.23e-167 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2420 - - pcin:129288632 973