Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2419 ATGCCGGAAAACATGAGTATTTCAGTGAATGGTCAGTCTCAGGTCCCTCCTGGCTTCAGATTCCACCCCACTGAAGAGGAGCTTTTGCAGTACTACTTGAGGAAGAAGGTCTCCTACGAAAAGATTGACCTCGACGTCATTCGTGACGTCGATCTCAACAAGCTCGAGCCCTGGGATATTCAAGAGAAGTGTAAGATAGGAACGACCCCACAAAACGATTGGTACTTCTTTAGCCACAAAGACAAGAAGTACCCCACCGGAACAAGGACCAACAGAGCCACGGCCGCCGGATTCTGGAAAGCCACCGGCCGGGACAAGGTGATATACAGCAACGGGAAGAGGATCGGAATGAGGAAGACTCTCGTCTTCTACAAAGGCCGAGCCCCTCACGGTCAGAAATCTGATTGGATCATGCACGAATATCGATTGGACGACAACACCAGCGACTCCAACATCGTGCCGAATGTGATGGGAGATGGAGCTCAGGAAGAAGGATGGGTGGTGTGCAGAATATTCAAGAAGAAGAACCATCTGAAAACTCTAGACTGTCCCCTAGCTTCGTCCATTATTACTGGAGAAAGCACCAGAAGAAGCCACATGTTCGACTCCTGCGACGACGAGGGAGCCTTAGAGCAGATTCTTCAGCAGATGGGAAGAAGCTGCAAGGAAGAGAACGAGACGAATTACAGCAACAATGGAAGATTCACTCTAGCGAGCTTCAACAATGGCGGTAATAATAGTTCCAGCAACTACAGCGAAAGATTCTTGAAGCTCCCAAGCTTAGAAAGTCCAAAATCCACGAGCTTAGAGAATAATAATAATATCGACACCAACAATGGGTACCACCCTATGATTCCAGAGATCGAAGGGTCCTTCACGGCCGTTCATCACATGGAGACATCTAACGTTGGAGGACTCGCCAGCTGGGCGGCTCTGGATCGGCTCGTGGCCTCGCAGCTCAATGGCCAGACCGAGTCTTCAAGGCAGCTGGCTTGCTTCAGTGATCCCGCGGGCAGCGCCATGATGGGTTACTGCACTAACGACGTCGTTCAAGACATGCAAATGCCTACCATACGTTCGTCCTCATCGTCGACGTCGACGTCCACGCACAGAGCTGCATACATGAGCCCTCACGCACAAGATTACAATAGCAGCGAGATTGACCTGTGGAGCTTTGCCAGATCATCATCGTCGTTGTTGTCGTCGTCCTCGGAGCCACTGTGCCATGTGTCCAACACGTCAGTGTAA 1248 0.5072 MPENMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTSDSNIVPNVMGDGAQEEGWVVCRIFKKKNHLKTLDCPLASSIITGESTRRSHMFDSCDDEGALEQILQQMGRSCKEENETNYSNNGRFTLASFNNGGNNSSSNYSERFLKLPSLESPKSTSLENNNNIDTNNGYHPMIPEIEGSFTAVHHMETSNVGGLASWAALDRLVASQLNGQTESSRQLACFSDPAGSAMMGYCTNDVVQDMQMPTIRSSSSSTSTSTHRAAYMSPHAQDYNSSEIDLWSFARSSSSLLSSSSEPLCHVSNTSV 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2419 415 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 272 - -
Prci12g2419 415 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Prci12g2419 415 ProSiteProfiles NAC domain profile. 15 174 IPR003441 GO:0003677|GO:0006355
Prci12g2419 415 SUPERFAMILY NAC domain 9 174 IPR036093 GO:0003677|GO:0006355
Prci12g2419 415 Gene3D NAC domain 24 179 IPR036093 GO:0003677|GO:0006355
Prci12g2419 415 FunFam NAC domain-containing protein 24 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2419 Prci-Chr12 41729175 41731481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2419 1 414 NAC Transcription Factor Family AT2G46770 53.613 3.88e-139 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci12g2419 NAM 3.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2419 - - pcin:129288653 828.165