Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2409 ATGGTGTCGGGTGTCGCCCGATTTATATGCGTTATCTCTGTGATTTACAAAGGGCCCTCTCAGTCGGGAGAAATGGCAGCGAAGGTTCTCCGCCTCACTTCACCTTCTTTCTCAGCATCAATAAACAAGCCCCAATTCGCAGCTCCAGCGATACGTTTCGCTGCATGCTCATCGTCTCTTCCTTCTTTGGTTCATTCATTATCTATCGCCGCTATCTTCTCTCCGGGCCCTTCGTCTTACTCTTCTTTATTGAAGGGGCAGAGCAGGGGAGGTAGGGTTTGTACGGCTTTGGTGGTCGTGGATAAAGAAACGGTGATTGCAGAAGAACCTCACGGTGAAAAATACGTGGACGCAGAAAACGATGACGTTTCCCGCGAGAGAGAACCAAGCAAAGTGGGAAGACCTTGTGAAGTATATGTTTGTAACCTTCCAAGGAGCTGTGGCTCAACACAGCTTCACGATATGTTCAAGCCTTATGGAAATGTTCTATCTGCCGAGGTTGATCGAAATGATGAGACCGGTGAAAGTAGAGGGTGTGGTTATGTCACAATGGGATCAGTAAACTCGGCGAAAAAAGCAGTTGCTGCATTGGATGGATCAGATATAGGTGGCCGTGAAATGCGGGTTAGATTTTCAGTTGAGATGAATCCTGGAAGGAGAAATGCTGAGACGATGAACTCGTCACCCCAGAAAGTTATATTCTATGAAACTCCTCACAAGTTGTATGTCGGCAATCTTGCTAGGGCTGTTAAACCAGAAGACTTATGGAATCATTTTAGCAGATTTGGAACTGTGGTTAGTGTAAGAATATTGCATGATCATAAAGAAGGGAATGGCCGTATTTATGCATTTCTCTCCTTCCTTTCACAGTCAGAACGTGATGCAGCAATGTCTCTTAATGGAACCGAACTTGGTGGCCGTACACTAGTAGTGAGAGAAGGAACGGAGAGGACTGGGCCTTAG 963 0.4621 MVSGVARFICVISVIYKGPSQSGEMAAKVLRLTSPSFSASINKPQFAAPAIRFAACSSSLPSLVHSLSIAAIFSPGPSSYSSLLKGQSRGGRVCTALVVVDKETVIAEEPHGEKYVDAENDDVSREREPSKVGRPCEVYVCNLPRSCGSTQLHDMFKPYGNVLSAEVDRNDETGESRGCGYVTMGSVNSAKKAVAALDGSDIGGREMRVRFSVEMNPGRRNAETMNSSPQKVIFYETPHKLYVGNLARAVKPEDLWNHFSRFGTVVSVRILHDHKEGNGRIYAFLSFLSQSERDAAMSLNGTELGGRTLVVREGTERTGP 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2409 320 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 214 IPR000504 GO:0003723
Prci12g2409 320 Gene3D - 220 319 IPR012677 -
Prci12g2409 320 Gene3D - 100 219 IPR012677 -
Prci12g2409 320 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 239 316 IPR000504 GO:0003723
Prci12g2409 320 PANTHER OS02G0815200 PROTEIN 32 312 - -
Prci12g2409 320 SUPERFAMILY RNA-binding domain, RBD 236 317 IPR035979 GO:0003676
Prci12g2409 320 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 241 309 IPR000504 GO:0003723
Prci12g2409 320 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 208 IPR000504 GO:0003723
Prci12g2409 320 SMART rrm1_1 240 312 IPR000504 GO:0003723
Prci12g2409 320 SMART rrm1_1 137 210 IPR000504 GO:0003723
Prci12g2409 320 SUPERFAMILY RNA-binding domain, RBD 127 220 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2409 Prci-Chr12 41642986 41646487 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2409 138 312 Eukaryotic Initiation Factors Gene Family AT3G16380 31.111 5.32e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2409 - - pcin:129288259 635.18