Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2406 ATGGGTGAAGTGGTCGTGGCGACGTGTGAACAGGCGATGGAGGTCGGGTTGGAGACAGAGGAGGATCAGAGCAAGAAGATGGTGCGGTGGGAGAAGTTTTTACCCCGGATGGTGCTTAGAGTATTACTTGTGGAAGCGGATGATTCTACTCGTCATGTTATCGCGGCCCTTCTTCGGAAATGCAGTTACAAAGTGGCTGCGGTTCCTGATGGACTAAAGGCATGGGAGACGTTGAAGCAAAAAGCTTCTGAAATAGATATCATTTTAACTGAAGTGGAGTTGCCATCAATATCTGGATTTGCACTCCTTACTTTAATCATGGAACATGATATATGCAAGAACATTCCTGTCATAATGATGTCTACTCATGATTCAGTTAGTTTGGCATTGAAATGCATTTTGAAAGGTGCAGCTGATTTTCTCATAAAGCCTGTTCGGAGGAATGAGCTGAGGAACTTGTGGCAACATGTATGGAGAAGACATGAGATTAGCCGGCAACCCCAAAATTTGACATTTCTGCAGAAAAAACTGGAAGCTGCTTCTGAAAATGATGCTGCAAGTAGTGGTTCTGTGGCTTCCACACAGAAAAGTAATGGACACCCTGAGAAAGGGAGTGAAGCCCAAAGCACTTGTACATCGCCAATTTTGGAAGCTGAGAGTGCATGCATGCAAAATATGCAGGGTACATCCTATGTGAAGAGTTCTTCCAATCTGAGCAACATTGACACGATGCAGCATGAAGACTCAACCATATTGGGATTGGAAAAGCTGTCAGTTAAGCATGACAATGAAGTTGGAGAGAAATCAGTGGCATTGTTATCAACGGCAGCAAAGTTTGACAAGAACTTTAAATCAACAGACTCTGGGCAGGATCACGGACGTGATTGTCCTGAAAAGAAGAATCAAGTTGAAGTTCTTAGAGCAGAGCCAAGCAGAGACAATCCTGATGACACACAGATTCATGAATGCAACCATGGACTGGTAGAAGGAGTTATTGATTTGATTGCCACATTGAAGAATCTACCAGACATTTATGATGAAAGCTGTAATCTCAGTGGTGTTGGTACAAAGAAGGTTGATTTTGATCCACGATTGGAACTTTCTCTAAGACAAGATTTTCCTGGCAGCTCTTCGAAGCAAACGACTGACGAAAAACAGGCATTGAACCATTCAAAGGCTTCTGCCTTTTCTTGGTATAACGGGTGCAAGTTTCCATCACCATTGGGAAGCTCTGCTAAAGCAGGTGGAAACAGGGGGAATTCTTGTGAAGCCAGTAAATTATCCGGAAGAACTGTTGGTACTTCCCGACAATTTGGCGGCACGAATCATACTTCAGAGAATAAGACAACCCTTGACATTGATCGGTTTGTTCAGGTCGAAAGACAGTTGTCAAACAGTCAACTTGGACCATTTCCTGCTGCTGCTGTTACTTCTGATAATAAGCCTACTGGGTACGGATATGGTTTTCCAATGTTCTACGCGCAATCTGATGTTCATTCCACGCAAGTTCCAAAACCTAACTGCCCGAAAGAGAGTTTTCCTTCTCCCATTCTCAAAAGTAACTCTTTCCAGTCCAATCCTGAAAGTTACAATTCAGAACAACGTTATCACTGTTCTGATGATCCCATCTGTACTTCTCGTGATAAAACTGCAAATGAAAAGAGCAATTTGGATCCTGCCGGGCGGCATTCTTCTGCTGTTGATCAGAGCACTAGTAACACCTCATGCCATGATACTGCAAATCAGAATAATAATGATGATGACAATACTAGTGCATATAAACTCGCATGTAAGATTGATGGAAATGCTTCTTCAGCTGCAGTGGTTAAGAGAAACCCTGAAAATTATGGGGACAGTGGCCATAGTTATGATGGATATAGAGGGACAGATTCTCATTGTCCCAGCCAAAGAGAAGCTGCTCTAACGAAGTTCCGAATGAAGCGGAAAGAGAGGTGCTATGAGAAAAAGGTCCGATATCTAAGCAGGAAAAGACTAGCAGAACAGCGTCCTCGGGTTAAAGGGCAGTTTGTGCGCCAGATGCATAATGATGATCATCCCGTTGCTGATGTTGATGGTGGTTCCTGA 2085 0.4341 MGEVVVATCEQAMEVGLETEEDQSKKMVRWEKFLPRMVLRVLLVEADDSTRHVIAALLRKCSYKVAAVPDGLKAWETLKQKASEIDIILTEVELPSISGFALLTLIMEHDICKNIPVIMMSTHDSVSLALKCILKGAADFLIKPVRRNELRNLWQHVWRRHEISRQPQNLTFLQKKLEAASENDAASSGSVASTQKSNGHPEKGSEAQSTCTSPILEAESACMQNMQGTSYVKSSSNLSNIDTMQHEDSTILGLEKLSVKHDNEVGEKSVALLSTAAKFDKNFKSTDSGQDHGRDCPEKKNQVEVLRAEPSRDNPDDTQIHECNHGLVEGVIDLIATLKNLPDIYDESCNLSGVGTKKVDFDPRLELSLRQDFPGSSSKQTTDEKQALNHSKASAFSWYNGCKFPSPLGSSAKAGGNRGNSCEASKLSGRTVGTSRQFGGTNHTSENKTTLDIDRFVQVERQLSNSQLGPFPAAAVTSDNKPTGYGYGFPMFYAQSDVHSTQVPKPNCPKESFPSPILKSNSFQSNPESYNSEQRYHCSDDPICTSRDKTANEKSNLDPAGRHSSAVDQSTSNTSCHDTANQNNNDDDNTSAYKLACKIDGNASSAAVVKRNPENYGDSGHSYDGYRGTDSHCPSQREAALTKFRMKRKERCYEKKVRYLSRKRLAEQRPRVKGQFVRQMHNDDHPVADVDGGS 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2406 694 CDD psREC_PRR 41 144 - -
Prci12g2406 694 Gene3D - 37 245 - -
Prci12g2406 694 MobiDBLite consensus disorder prediction 540 556 - -
Prci12g2406 694 Pfam Response regulator receiver domain 41 152 IPR001789 GO:0000160
Prci12g2406 694 SUPERFAMILY CheY-like 39 170 IPR011006 -
Prci12g2406 694 MobiDBLite consensus disorder prediction 413 447 - -
Prci12g2406 694 MobiDBLite consensus disorder prediction 557 589 - -
Prci12g2406 694 MobiDBLite consensus disorder prediction 500 539 - -
Prci12g2406 694 ProSiteProfiles CCT domain profile. 637 679 IPR010402 GO:0005515
Prci12g2406 694 SMART REC_2 39 154 IPR001789 GO:0000160
Prci12g2406 694 MobiDBLite consensus disorder prediction 183 211 - -
Prci12g2406 694 MobiDBLite consensus disorder prediction 500 589 - -
Prci12g2406 694 ProSiteProfiles Response regulatory domain profile. 40 158 IPR001789 GO:0000160
Prci12g2406 694 Pfam CCT motif 637 679 IPR010402 GO:0005515
Prci12g2406 694 PANTHER TWO-COMPONENT RESPONSE REGULATOR 39 323 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2406 Prci-Chr12 41632739 41637987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2406 636 686 Response Regulator Gene Family AT5G24470 80.392 1.36e-19 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Prci12g2406 Response_reg 1.9e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2406 K12130 - gmx:100779346 691.419