Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2404 ATGATGGAGAGGATTCAAGGACCCATCAATTCCTATTTCTTTGGTGAGCATTTGGAAGTAAATTGTTTCCAGCAAGGTTTCATCAGCACAGAGGATGAGGAACAACTTTATATATCGAGCTTAGAGGATGAAAAGATGCCATTCTTGCAGATGTTGCAGAGTGTGGGATCTTCACAACAGTTTTTCCCATTCGCAGAGGCAAATTTTCAAACCTTCCTAAGGCTACAGAACCTGAAGAAACAACAACAACCATGGGAAGACAAAGTTCACTTGCCCGGATTGGAGACCCCAATCCAAGCTAAGGAACTTGAAAGCTGCGTCACACACGACGTTGTCGAGATACACTCGCCAATGAAATCCCAAACCAACGAAGAATCTCATCTTCCTCCTCGTTCAGCCACAACGGTTCAGAAACAACAGACCAATCAAGCTGAAAATTCCAGCAGAGGCCCCAAACGGAGAAAGCGAAAGAGAACGAGGCCAGTCAAGAACAAGGAAGAAGTGGAGAACCAGAGGATGACCCACATTGCCGTCGAACGAAACCGGCGACGCCAGATGAACGACCATCTCAGTGTTCTTAGGACCCTCATGCCCCCTTCCTATATTCAGAGGGGTGACCAAGCGTCTATCATCGGAGGTGCAATTGATTTCGTGAAGGAATTGGAACAACTACTTCAAACCCTCGAGGCACAGAAGAGGATTAGAAAGAACGAAGAAGCTAGGTCTCCTTACGGAGAGACTGTGAAATCATCATCACTGAACAACGAAGAAAGAGAAGTAGAGCATGGTGGGGAAGAAGAAGAACTGAAGGAAGCAGAGATCATAGAGGTGACGGTGATTCAGACGCATGTGAACTTGAAGATTCGATGCAGCAAAAGACAGGGACAACTGGTGAGAGCCATTGTTGGGTTGGAAGATCTTCGGCTTAGCGTTCTTCATCTTAACATCACCTCCTCGCCGGGATCGGTGCTATTCTGTTTCAATCTCAAGATTGAAGATGAGTGTAAGCTAGGATCGGCAAACGAGATAGCAGAAGCAGTTCGTGATATATTCGGTACGATATATAACTATTAG 1074 0.4581 MMERIQGPINSYFFGEHLEVNCFQQGFISTEDEEQLYISSLEDEKMPFLQMLQSVGSSQQFFPFAEANFQTFLRLQNLKKQQQPWEDKVHLPGLETPIQAKELESCVTHDVVEIHSPMKSQTNEESHLPPRSATTVQKQQTNQAENSSRGPKRRKRKRTRPVKNKEEVENQRMTHIAVERNRRRQMNDHLSVLRTLMPPSYIQRGDQASIIGGAIDFVKELEQLLQTLEAQKRIRKNEEARSPYGETVKSSSLNNEEREVEHGGEEEELKEAEIIEVTVIQTHVNLKIRCSKRQGQLVRAIVGLEDLRLSVLHLNITSSPGSVLFCFNLKIEDECKLGSANEIAEAVRDIFGTIYNY 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2404 357 PANTHER MAX DIMERIZATION, MAD 121 354 - -
Prci12g2404 357 MobiDBLite consensus disorder prediction 252 267 - -
Prci12g2404 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 237 IPR036638 GO:0046983
Prci12g2404 357 MobiDBLite consensus disorder prediction 118 170 - -
Prci12g2404 357 Pfam Helix-loop-helix DNA-binding domain 171 222 IPR011598 GO:0046983
Prci12g2404 357 Gene3D - 161 245 IPR036638 GO:0046983
Prci12g2404 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 221 IPR011598 GO:0046983
Prci12g2404 357 MobiDBLite consensus disorder prediction 238 267 - -
Prci12g2404 357 CDD bHLH_AtFAMA_like 173 244 - -
Prci12g2404 357 SMART finulus 176 227 IPR011598 GO:0046983
Prci12g2404 357 MobiDBLite consensus disorder prediction 118 147 - -
Prci12g2404 357 Coils Coil 218 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2404 Prci-Chr12 41606403 41609764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2404 51 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46810 42.330 5.73e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci12g2404 HLH 2.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2404 - - gmx:100789928 374.4