Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2401 ATGGCTCAATCACAACAATCTCATTCTCAGCCCAAGCCTCTTCACGACGCAGGGAACAATCATCCACTGAAGCAACATTCACCAGAAATAGATGACGTCGAAGAAGAGAGCTTCTCCTACGCCATGCAGCTCGCGACTTCTACCGCTATTTCCATGGCCATGCAAACGGCGGTGGAGCTCGGCATCTTCGACGTCATTCACAGAGTTGGTCACGACGCCAGGATGTCAGCCGCCGAGATCGCGACGGAGCTTTCTTGCAAGAACTCCGAAGCGCCTTCCGCGCTCGATCGCCTCCTCTGGCTTCTAGCGTCTCACTCTGTTCTTACCTGTTCCGTCGTGGCCGACGAGGATCAGGGGCAGCGATGTTTCCGACGATTGTACGGCCTCTCTCCGGTGGCCAAATTCTTTGCGCGAAATGCGGAAGGAGTGTCGCTGGGCCCTTTTATTGCTTTGATTCAAGATAAGGTCTTCATTGAGAGCTGGAGGAAACTGAAGGATGCAATATCGGATGGAGGCATCGCGTTCAATAAGGTGCACGGATCACATGCTTTTGAGTATCCAAAATTGGATTCAAGGTTTAACGATGTGTTTAACAAGGCAATGGTAAATCAGACCACCTTGGTGGTGACTAAGATTCTTGAATACTACAAAGGTTTTGGGAACATCACTAGACTCGTCGACGTTGGTGGAGGTCTTGGGATTACTCTCAGCTTGATCACTTCCAAATATCCAAATATTCAAGGAATCAATTTCGACTTACCTCATGTCATCCAACACGCTCCTCCTTATCCTGGAGTGGAACACGTGGGAGGGGATATGTTTGAAAGTGTGCCTAAAGGAGATGCTGTTTTCATGAAGTGGATACTTCATGATTGGAGTGACGAGTGGTGCTTGAAGTTATTGAAGAATTGCCATAACGCCATTCCTGAAGATGGAAAAGTGATTGTGGTGGATGCAATTCTGCATGCCGTACCAGAAATTTCTGCTTCTGCCAAGAGCACTTCCCAGCTTGACATGATTATGATGACTCAAAACCCAGGTGGTAGAGAGAGAAGTGAGGAAGAGTTCATGGAATTGGCCAGGTCAGCAGGGTTTAGAGGCGTTAGATATGAGTGTTTTGTTCGTAACTTCTGGATTATGGAATTCTACAAATAG 1155 0.4771 MAQSQQSHSQPKPLHDAGNNHPLKQHSPEIDDVEEESFSYAMQLATSTAISMAMQTAVELGIFDVIHRVGHDARMSAAEIATELSCKNSEAPSALDRLLWLLASHSVLTCSVVADEDQGQRCFRRLYGLSPVAKFFARNAEGVSLGPFIALIQDKVFIESWRKLKDAISDGGIAFNKVHGSHAFEYPKLDSRFNDVFNKAMVNQTTLVVTKILEYYKGFGNITRLVDVGGGLGITLSLITSKYPNIQGINFDLPHVIQHAPPYPGVEHVGGDMFESVPKGDAVFMKWILHDWSDEWCLKLLKNCHNAIPEDGKVIVVDAILHAVPEISASAKSTSQLDMIMMTQNPGGRERSEEEFMELARSAGFRGVRYECFVRNFWIMEFYK 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2401 384 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 42 384 IPR016461 GO:0008168
Prci12g2401 384 SUPERFAMILY "Winged helix" DNA-binding domain 33 139 IPR036390 -
Prci12g2401 384 Gene3D - 19 136 IPR036388 -
Prci12g2401 384 MobiDBLite consensus disorder prediction 1 27 - -
Prci12g2401 384 Pfam O-methyltransferase domain 161 366 IPR001077 GO:0008171
Prci12g2401 384 CDD AdoMet_MTases 224 321 - -
Prci12g2401 384 PANTHER O-METHYLTRANSFERASE 41 373 IPR016461 GO:0008168
Prci12g2401 384 Pfam Dimerisation domain 52 103 IPR012967 GO:0046983
Prci12g2401 384 FunFam Caffeic acid 3-O-methyltransferase 20 136 - -
Prci12g2401 384 FunFam Caffeic acid O-methyltransferase 137 384 - -
Prci12g2401 384 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 142 383 IPR029063 -
Prci12g2401 384 PIRSF O-mtase 21 384 IPR016461 GO:0008168
Prci12g2401 384 Gene3D Vaccinia Virus protein VP39 137 384 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2401 Prci-Chr12 41575917 41578732 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2401 33 384 Monolignol Biosynthesis Gene Families AT5G54160 52.841 6.96e-137 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2401 K13066 - qsa:O6P43_027445 506.523