Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2398 ATGGCTCAATCACAACAATCTCATTCTCAGCCCAAGCCTCTTCACGACGCAGGGAACAATCATCCACTGAAGCAACATTCACCAGAAATAGATGACGTCGAAGAAGAGAGCTTCTCCTACGCCATGCAGCTCGCGACTTCTACCGCTATTTCCATGGCCATGCAAACGGCGGTGGAGCTCGGCATCTTCGACGTCATTCACAGAGTTGGTCACGACGCCAGGATGTCAGCCGCCGAGATCGCGACGGAGCTTTCTTGCAAGAACTCCGAAGCGCCTTCCGCGCTCGATCGCCTCCTCTGGCTTCTAGCGTCTCACTCTGTTCTTACCTGTTCCGTCGTGGCCGACGAGGATCAGGGGCAGCGATGTTTCCGACGATTGTACGGCCTCTCTCCGGTGGCCAAATTCTTTGCGCGAAATGCGGAAGGAGTGTCGCTGGGCCCTTTTATTGCTTTGATTCAAGATAAGGTCTTCATTGAGAGCTGGAGGAAACTGAAGGATGCAATATCGGATGGAGGCATCGCGTTCAATAAGGTGCACGGATCACATGCTTTTGAGTATCCAAAATTGGATTCAAGGTTTAACGATGTGTTTAACAAGGCAATGGTAAATCAGACCACCTTGGTGGTGACTAAGATTCTTGAATACTACAAAGGTTTTGGGAACATCACTAGACTCGTCGACGTTGGTGGAGGTCTTGGGATTACTCTCAGCTTGATCACTTCCAAATATCCAAATATTCAAGGAGTGGAACACGTGGGAGGGGATATGTTTGAAAGTGTGCCTAAAGGAGATGCTGTTTTCATGAAGGTGTGTCAGCACTCGTGGATACTTCATGATTGGAGTGACGAGTGGTGCTTGAAGTTATTGAAGAATTGCCATAACGCCATTCCTGAAGATGGAAAAGTGATTGTGGTGGATGCAATTCTGCATGCCGTACCAGAAATTTCTGCTTCTGCCAAGAGCACTTCCCAGCTTGACATGATTATGATGACTCAAAACCCAGGTGGTAGAGAGAGAAGTGAGGAAGAGTTCATGGAATTGGCCAGGTCAGCAGGGTTTAGAGGCGTTAGATATGAGTGTTTTGTTCGTAACTTCTGGATTATGGAATTCTACAAATAG 1119 0.4799 MAQSQQSHSQPKPLHDAGNNHPLKQHSPEIDDVEEESFSYAMQLATSTAISMAMQTAVELGIFDVIHRVGHDARMSAAEIATELSCKNSEAPSALDRLLWLLASHSVLTCSVVADEDQGQRCFRRLYGLSPVAKFFARNAEGVSLGPFIALIQDKVFIESWRKLKDAISDGGIAFNKVHGSHAFEYPKLDSRFNDVFNKAMVNQTTLVVTKILEYYKGFGNITRLVDVGGGLGITLSLITSKYPNIQGVEHVGGDMFESVPKGDAVFMKVCQHSWILHDWSDEWCLKLLKNCHNAIPEDGKVIVVDAILHAVPEISASAKSTSQLDMIMMTQNPGGRERSEEEFMELARSAGFRGVRYECFVRNFWIMEFYK 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2398 372 Gene3D - 19 136 IPR036388 -
Prci12g2398 372 SUPERFAMILY "Winged helix" DNA-binding domain 33 139 IPR036390 -
Prci12g2398 372 Gene3D Vaccinia Virus protein VP39 137 372 IPR029063 -
Prci12g2398 372 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 142 371 IPR029063 -
Prci12g2398 372 MobiDBLite consensus disorder prediction 1 27 - -
Prci12g2398 372 FunFam Caffeic acid 3-O-methyltransferase 20 136 - -
Prci12g2398 372 PIRSF O-mtase 21 372 IPR016461 GO:0008168
Prci12g2398 372 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 42 372 IPR016461 GO:0008168
Prci12g2398 372 Pfam O-methyltransferase domain 248 354 IPR001077 GO:0008171
Prci12g2398 372 PANTHER O-METHYLTRANSFERASE 41 361 IPR016461 GO:0008168
Prci12g2398 372 Pfam Dimerisation domain 52 103 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2398 Prci-Chr12 41575910 41578732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2398 33 372 Monolignol Biosynthesis Gene Families AT5G54160 48.459 3.64e-119 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2398 K13066 - qsa:O6P43_027445 456.447