Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2392 ATGGACGCATACTCCTCAGGAGAAGAAGTGGTTGTTAAGACAAGAAAACCTTATACAATCACAAAGCAAAGAGAAAGATGGACTGAGGAGGAGCATAATAGGTTTCTAGAAGCCTTAAAGCTTTATGGGAGAGCATGGCAGCGTATTGAAGAGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGCCACGCGCAGAAATTCTTTTCAAAGCTGGAGAAAGAGGCCCTTGAAAAGGGTGTTCCAATAGGTCAAGCTCTTGACATTGACATCCCTCCTCCACGGCCTAAAAGAAAACCAACTAATCCTTATCCTCGGAAGACCAGTACTGGCTCTCCAGCATCACATAATGGAGCAAAGGATCGCAAACTAACGTCAGTTTCACCTCCGCATGGTAAACAAGCACTGGACTTAGAGAAAGAACCACTTCCGGAGAAATGTAATGGAGATGAAAGACCAATAAATGTCACTGAAAATAAGGATGAGAACTGCTCAAGAGTATTTGCTATTCCACAGGCCTGTTCCACTATATCTTCAGCAAAAAACAGATCAATTTCATTGTCAGTACCACTGAGAAACTCATGCATTTTAAGGGAGTTCATACCTTCAGTAAGAGTGGGAATTACTCGAGATGAAACAAATGATTCTTCTGTCACTATTGAACTTGAAAATCAGAAGTGCAAAATAGATGATGGAAAACCAGAACAGACAAAAGCCTCTAAGTTGGAGGGTTCTGATGCTTCAGGTGTGAAATTGGTTCCAAGTCAGAAAACAGATGATCTCAATTGTGCATTAACAACAGATGGGATACAAGACAATCAGAATTACCCAAGGCATGTCCCAGTGCACGGTCTTGATGGGAACCTGGGAACAAGTGCACAAAACCCTCCCCAAGAAATGCTATTACGAGACTCTATATTTCAGCCTGTGGGAGAGCTTAGTGGGCAACCTAATATTTTCACAGATTCAGCTACGTCAAACACAAGTAAGAATAACACACCTCAATGTCCTAGTCATCAAATATTTCCTGCTTGTCCTCCCTTCCCGCAAGTTCTCTGTAGTCAAGATCATTGCCATTCATTTTTTCACATGTCCTCCACATTTTCAAGCCTCATTGTCTCCACCCTAATGCAAAATCCTGCAGCCCATGCTGCAGCTAGTTTTGCTGCTACGTTTTGGCCCTATGCAAATGCAGAAGCTTCAGCTGATTCTCTTGCTTCCTCTCAAGGAGGTTTCACATCAAGACAAATTAGCTGTCCTCCAAGTATGGCAGCTATTGCAGCTGCTACTGTGGCTGCTGCAACTGCATGGTGGACAGCCCATGGACTGCTTCCCTTGTGTGCTCCACTCCATTCTGCTTTCTCCTCTCCTCCTGCATCAGCGGTGGTAGTTTCTTCCATGAATACAGGTGAAGCACCAGCAGCTAGAAAAGATCAGAAAGAGACTACAGTTGAGAATCCTCCTCTGCTAGATCAGCTGCCAAATGGAGAATATTCAGAAGCTCTGCAAGCTCAACATTCAGACTCCAAGTCGCAAGCTGTTTCTTCATCAGATTCTAAGAGTGGAGATGCCAAGTTAACCACTTCACCTAAGGCTGCTGAACATGACAAGAATGAAGCAATTTCTGAGCACCTTGATTCTAACAAGACCAACGGAAGAAGACCAGTAGACCGTTCTTCATGTGGCTCCAACACAACCTCTAGTAGTGATATAGAGACAGATGCATTAGAGAAGAATGAGAAAGGGAAGGAAGAGTCCTTAGCACCAGATGCAAACCACTTAACTGAGCCCAGTAACCGCCGTAGTAGGAGTGCTGGCAACCCTACTGATTCTTGGAAGGAGGTCTCTGAAGAGGGGCGACAGGCCTTTCGGGCTCTCTTCTCCAGAGAGGTTTTGCCACAAAGCTTTTCACCACCACTCTTGGAAAAGGACATTCAGAAAGACCACAAAAACGAGGATCACAGGAAGAACATGGTTGACAAAGAGGAAGACCTTGACAGCAACAAATACAGTCCTGATCAGGTAGGAGTAAAGAAGAACATGCCATTCTTAGAATACACACATAAAGAGGAAGGACTTTTAACGATAGGGCTCGGACAAGGAAAGCTTAAGGCATGTCGAACTGGGTTTAAACCTTACAAAAGATGTTCAGCGGAGGCCAAGGAAAATAGGGTTGGAACTACTAGTAACGAAGGTGAAGAGAAACGTCCGAAGAGAATGCGATTGGAGGGGGAGGCTTCCACTTGA 2247 0.4446 MDAYSSGEEVVVKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEALEKGVPIGQALDIDIPPPRPKRKPTNPYPRKTSTGSPASHNGAKDRKLTSVSPPHGKQALDLEKEPLPEKCNGDERPINVTENKDENCSRVFAIPQACSTISSAKNRSISLSVPLRNSCILREFIPSVRVGITRDETNDSSVTIELENQKCKIDDGKPEQTKASKLEGSDASGVKLVPSQKTDDLNCALTTDGIQDNQNYPRHVPVHGLDGNLGTSAQNPPQEMLLRDSIFQPVGELSGQPNIFTDSATSNTSKNNTPQCPSHQIFPACPPFPQVLCSQDHCHSFFHMSSTFSSLIVSTLMQNPAAHAAASFAATFWPYANAEASADSLASSQGGFTSRQISCPPSMAAIAAATVAAATAWWTAHGLLPLCAPLHSAFSSPPASAVVVSSMNTGEAPAARKDQKETTVENPPLLDQLPNGEYSEALQAQHSDSKSQAVSSSDSKSGDAKLTTSPKAAEHDKNEAISEHLDSNKTNGRRPVDRSSCGSNTTSSSDIETDALEKNEKGKEESLAPDANHLTEPSNRRSRSAGNPTDSWKEVSEEGRQAFRALFSREVLPQSFSPPLLEKDIQKDHKNEDHRKNMVDKEEDLDSNKYSPDQVGVKKNMPFLEYTHKEEGLLTIGLGQGKLKACRTGFKPYKRCSAEAKENRVGTTSNEGEEKRPKRMRLEGEAST 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2392 748 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Prci12g2392 748 SMART sant 23 71 IPR001005 -
Prci12g2392 748 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Prci12g2392 748 MobiDBLite consensus disorder prediction 592 611 - -
Prci12g2392 748 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Prci12g2392 748 MobiDBLite consensus disorder prediction 529 553 - -
Prci12g2392 748 MobiDBLite consensus disorder prediction 573 590 - -
Prci12g2392 748 MobiDBLite consensus disorder prediction 84 154 - -
Prci12g2392 748 PANTHER SWI/SNF COMPLEX-RELATED 7 631 - -
Prci12g2392 748 MobiDBLite consensus disorder prediction 629 676 - -
Prci12g2392 748 MobiDBLite consensus disorder prediction 498 526 - -
Prci12g2392 748 MobiDBLite consensus disorder prediction 554 572 - -
Prci12g2392 748 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Prci12g2392 748 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Prci12g2392 748 MobiDBLite consensus disorder prediction 134 154 - -
Prci12g2392 748 MobiDBLite consensus disorder prediction 229 251 - -
Prci12g2392 748 MobiDBLite consensus disorder prediction 103 122 - -
Prci12g2392 748 CDD SANT 26 69 IPR001005 -
Prci12g2392 748 FunFam protein REVEILLE 6 isoform X1 26 74 - -
Prci12g2392 748 Gene3D - 26 73 - -
Prci12g2392 748 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Prci12g2392 748 MobiDBLite consensus disorder prediction 718 748 - -
Prci12g2392 748 MobiDBLite consensus disorder prediction 470 617 - -
Prci12g2392 748 MobiDBLite consensus disorder prediction 642 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2392 Prci-Chr12 41521278 41531671 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci12g2392 Myb_DNA-binding 2.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2392 K12133 - gmx:100101859 913.294