Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2390 ATGGACGCATACTCCTCAGGAGAAGAAGTGGTTGTTAAGGTAAGGTTAATATCTGGCCGAGAAAAGACAAGAAAACCTTATACAATCACAAAGCAAAGAGAAAGATGGACTGAGGAGGAGCATAATAGGTTTCTAGAAGCCTTAAAGCTTTATGGGAGAGCATGGCAGCGTATTGAAGAGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGCCACGCGCAGAAATTCTTTTCAAAGCTGGAGAAAGAGGCCCTTGAAAAGGGTGTTCCAATAGGTCAAGCTCTTGACATTGACATCCCTCCTCCACGGCCTAAAAGAAAACCAACTAATCCTTATCCTCGGAAGACCAGTACTGGCTCTCCAGCATCACATAATGGAGCAAAGGATCGCAAACTAACGTCAGTTTCACCTCCGCATGGTAAACAAGCACTGGACTTAGAGAAAGAACCACTTCCGGAGAAATGTAATGGAGATGAAAGACCAATAAATGTCACTGAAAATAAGGATGAGAACTGCTCAAGAGTATTTGCTATTCCACAGGCCTGTTCCACTATATCTTCAGCAAAAAACAGATCAATTTCATTGTCAGTACCACTGAGAAACTCATGCATTTTAAGGGAGTTCATACCTTCAGTAAGAGTGGGAATTACTCGAGATGAAACAAATGATTCTTCTGTCACTATTGAACTTGAAAATCAGAAGTGCAAAATAGATGATGGAAAACCAGAACAGACAAAAGCCTCTAAGTTGGAGGGTTCTGATGCTTCAGGTGTGAAATTGGTTCCAAGTCAGAAAACAGATGATCTCAATTGTGCATTAACAACAGATGGGATACAAGACAATCAGAATTACCCAAGGCATGTCCCAGTGCACGGTCTTGATGGGAACCTGGGAACAAGTGCACAAAACCCTCCCCAAGAAATGCTATTACGAGACTCTATATTTCAGCCTGTGGGAGAGCTTAGTGGGCAACCTAATATTTTCACAGATTCAGCTACGTCAAACACAACCCATGCTGCAGCTAGTTTTGCTGCTACGTTTTGGCCCTATGCAAATGCAGAAGCTTCAGCTGATTCTCTTGCTTCCTCTCAAGGAGGTTTCACATCAAGACAAATTAGCTGTCCTCCAAGTATGGCAGCTATTGCAGCTGCTACTGTGGCTGCTGCAACTGCATGGTGGACAGCCCATGGACTGCTTCCCTTGTGTGCTCCACTCCATTCTGCTTTCTCCTCTCCTCCTGCATCAGCGGTGGTAGTTTCTTCCATGAATACAGGTGAAGCACCAGCAGCTAGAAAAGATCAGAAAGAGACTACAGTTGAGAATCCTCCTCTGCTAGATCAGCTGCCAAATGGAGAATATTCAGAAGCTCTGCAAGCTCAACATTCAGACTCCAAGTCGCAAGCTGTTTCTTCATCAGATTCTAAGAGTGGAGATGCCAAGTTAACCACTTCACCTAAGGCTGCTGAACATGACAAGAATGAAGCAATTTCTGAGCACCTTGATTCTAACAAGACCAACGGAAGAAGACCAGTAGACCGTTCTTCATGTGGCTCCAACACAACCTCTAGTAGTGATATAGAGACAGATGCATTAGAGAAGAATGAGAAAGGGAAGGAAGAGTCCTTAGCACCAGATGCAAACCACTTAACTGAGCCCAGTAACCGCCGTAGTAGGAGTGCTGGCAACCCTACTGATTCTTGGAAGGAGGTCTCTGAAGAGGGGCGACAGGCCTTTCGGGCTCTCTTCTCCAGAGAGGTTTTGCCACAAAGCTTTTCACCACCACTCTTGGAAAAGGACATTCAGAAAGACCACAAAAACGAGGATCACAGGAAGAACATGGTTGACAAAGAGGAAGACCTTGACAGCAACAAATACAGTCCTGATCAGGTAGGAGTAAAGAAGAACATGCCATTCTTAGAATACACACATAAAGAGGAAGGACTTTTAACGATAGGGCTCGGACAAGGAAAGCTTAAGGCATGTCGAACTGGGTTTAAACCTTACAAAAGATGTTCAGCGGAGGCCAAGGAAAATAGGGTTGGAACTACTAGTAACGAAGGTGAAGAGAAACGTCCGAAGAGAATGCGATTGGAGGGGGAGGCTTCCACTTGA 2115 0.4459 MDAYSSGEEVVVKVRLISGREKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEALEKGVPIGQALDIDIPPPRPKRKPTNPYPRKTSTGSPASHNGAKDRKLTSVSPPHGKQALDLEKEPLPEKCNGDERPINVTENKDENCSRVFAIPQACSTISSAKNRSISLSVPLRNSCILREFIPSVRVGITRDETNDSSVTIELENQKCKIDDGKPEQTKASKLEGSDASGVKLVPSQKTDDLNCALTTDGIQDNQNYPRHVPVHGLDGNLGTSAQNPPQEMLLRDSIFQPVGELSGQPNIFTDSATSNTTHAAASFAATFWPYANAEASADSLASSQGGFTSRQISCPPSMAAIAAATVAAATAWWTAHGLLPLCAPLHSAFSSPPASAVVVSSMNTGEAPAARKDQKETTVENPPLLDQLPNGEYSEALQAQHSDSKSQAVSSSDSKSGDAKLTTSPKAAEHDKNEAISEHLDSNKTNGRRPVDRSSCGSNTTSSSDIETDALEKNEKGKEESLAPDANHLTEPSNRRSRSAGNPTDSWKEVSEEGRQAFRALFSREVLPQSFSPPLLEKDIQKDHKNEDHRKNMVDKEEDLDSNKYSPDQVGVKKNMPFLEYTHKEEGLLTIGLGQGKLKACRTGFKPYKRCSAEAKENRVGTTSNEGEEKRPKRMRLEGEAST 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2390 704 MobiDBLite consensus disorder prediction 529 546 - -
Prci12g2390 704 MobiDBLite consensus disorder prediction 548 567 - -
Prci12g2390 704 MobiDBLite consensus disorder prediction 454 482 - -
Prci12g2390 704 MobiDBLite consensus disorder prediction 485 509 - -
Prci12g2390 704 NCBIfam myb-like DNA-binding domain, SHAQKYF class 31 80 IPR006447 GO:0003677
Prci12g2390 704 MobiDBLite consensus disorder prediction 585 632 - -
Prci12g2390 704 MobiDBLite consensus disorder prediction 143 163 - -
Prci12g2390 704 SMART sant 32 80 IPR001005 -
Prci12g2390 704 MobiDBLite consensus disorder prediction 510 528 - -
Prci12g2390 704 SUPERFAMILY Homeodomain-like 27 83 IPR009057 -
Prci12g2390 704 Pfam Myb-like DNA-binding domain 33 76 IPR001005 -
Prci12g2390 704 MobiDBLite consensus disorder prediction 93 163 - -
Prci12g2390 704 ProSiteProfiles Myb-like domain profile. 28 78 IPR001005 -
Prci12g2390 704 CDD SANT 35 78 IPR001005 -
Prci12g2390 704 FunFam protein REVEILLE 6 isoform X1 35 83 - -
Prci12g2390 704 Gene3D - 35 82 - -
Prci12g2390 704 ProSiteProfiles SANT domain profile. 31 82 IPR017884 -
Prci12g2390 704 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 82 IPR017930 -
Prci12g2390 704 PANTHER SWI/SNF COMPLEX-RELATED 21 587 - -
Prci12g2390 704 MobiDBLite consensus disorder prediction 674 704 - -
Prci12g2390 704 MobiDBLite consensus disorder prediction 426 573 - -
Prci12g2390 704 MobiDBLite consensus disorder prediction 598 625 - -
Prci12g2390 704 MobiDBLite consensus disorder prediction 112 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2390 Prci-Chr12 41521278 41531673 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci12g2390 Myb_DNA-binding 2.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2390 K12133 - gmx:100101859 772.696