Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2388 ATGGACGCATACTCCTCAGGAGAAGAAGTGGTTGTTAAGGTAAGGTTAATATCTGGCCGAGAAAAGACAAGAAAACCTTATACAATCACAAAGCAAAGAGAAAGATGGACTGAGGAGGAGCATAATAGGTTTCTAGAAGCCTTAAAGCTTTATGGGAGAGCATGGCAGCGTATTGAAGAGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGCCACGCGCAGAAATTCTTTTCAAAGCTGGAGAAAGAGGCCCTTGAAAAGGGTGTTCCAATAGGTCAAGCTCTTGACATTGACATCCCTCCTCCACGGCCTAAAAGAAAACCAACTAATCCTTATCCTCGGAAGACCAGTACTGGCTCTCCAGCATCACATAATGGAGCAAAGGATCGCAAACTAACGTCAGTTTCACCTCCGCATGGTAAACAAGCACTGGACTTAGAGAAAGAACCACTTCCGGAGGCCTGTTCCACTATATCTTCAGCAAAAAACAGATCAATTTCATTGTCAGTACCACTGAGAAACTCATGCATTTTAAGGGAGTTCATACCTTCAGTAAGAGTGGGAATTACTCGAGATGAAACAAATGATTCTTCTGTCACTATTGAACTTGAAAATCAGAAGTGCAAAATAGATGATGGAAAACCAGAACAGACAAAAGCCTCTAAGTTGGAGGGTTCTGATGCTTCAGGTGTGAAATTGGTTCCAAGTCAGAAAACAGATGATCTCAATTGTGCATTAACAACAGATGGGATACAAGACAATCAGAATTACCCAAGGCATGTCCCAGTGCACGGTCTTGATGGGAACCTGGGAACAAGTGCACAAAACCCTCCCCAAGAAATGCTATTACGAGACTCTATATTTCAGCCTGTGGGAGAGCTTAGTGGGCAACCTAATATTTTCACAGATTCAGCTACGTCAAACACAAGTAAGAATAACACACCTCAATGTCCTAGTCATCAAATATTTCCTGCTTGTCCTCCCTTCCCGCAAGTTCTCTGTAGTCAAGATCATTGCCATTCATTTTTTCACATGTCCTCCACATTTTCAAGCCTCATTGTCTCCACCCTAATGCAAAATCCTGCAGCCCATGCTGCAGCTAGTTTTGCTGCTACGTTTTGGCCCTATGCAAATGCAGAAGCTTCAGCTGATTCTCTTGCTTCCTCTCAAGGAGGTTTCACATCAAGACAAATTAGCTGTCCTCCAAGTATGGCAGCTATTGCAGCTGCTACTGTGGCTGCTGCAACTGCATGGTGGACAGCCCATGGACTGCTTCCCTTGTGTGCTCCACTCCATTCTGCTTTCTCCTCTCCTCCTGCATCAGCGGTGGTAGTTTCTTCCATGAATACAGGTGAAGCACCAGCAGCTAGAAAAGATCAGAAAGAGACTACAGTTGAGAATCCTCCTCTGCTAGATCAGCTGCCAAATGGAGAATATTCAGAAGCTCTGCAAGCTCAACATTCAGACTCCAAGTCGCAAGCTGTTTCTTCATCAGATTCTAAGAGTGGAGATGCCAAGTTAACCACTTCACCTAAGGCTGCTGAACATGACAAGAATGAAGCAATTTCTGAGCACCTTGATTCTAACAAGACCAACGGAAGAAGACCAGTAGACCGTTCTTCATGTGGCTCCAACACAACCTCTAGTAGTGATATAGAGACAGATGCATTAGAGAAGAATGAGAAAGGGAAGGAAGAGTCCTTAGCACCAGATGCAAACCACTTAACTGAGCCCAGTAACCGCCGTAGTAGGAGTGCTGGCAACCCTACTGATTCTTGGAAGGAGGTCTCTGAAGAGGGGCGACAGGCCTTTCGGGCTCTCTTCTCCAGAGAGGTTTTGCCACAAAGCTTTTCACCACCACTCTTGGAAAAGGACATTCAGAAAGACCACAAAAACGAGGATCACAGGAAGAACATGGTTGACAAAGAGGAAGACCTTGACAGCAACAAATACAGTCCTGATCAGGTAGGAGTAAAGAAGAACATGCCATTCTTAGAATACACACATAAAGAGGAAGGACTTTTAACGATAGGGCTCGGACAAGGAAAGCTTAAGGCATGTCGAACTGGGTTTAAACCTTACAAAAGATGTTCAGCGGAGGCCAAGGAAAATAGGGTTGGAACTACTAGTAACGAAGGTGAAGAGAAACGTCCGAAGAGAATGCGATTGGAGGGGGAGGCTTCCACTTGA 2193 0.4478 MDAYSSGEEVVVKVRLISGREKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEALEKGVPIGQALDIDIPPPRPKRKPTNPYPRKTSTGSPASHNGAKDRKLTSVSPPHGKQALDLEKEPLPEACSTISSAKNRSISLSVPLRNSCILREFIPSVRVGITRDETNDSSVTIELENQKCKIDDGKPEQTKASKLEGSDASGVKLVPSQKTDDLNCALTTDGIQDNQNYPRHVPVHGLDGNLGTSAQNPPQEMLLRDSIFQPVGELSGQPNIFTDSATSNTSKNNTPQCPSHQIFPACPPFPQVLCSQDHCHSFFHMSSTFSSLIVSTLMQNPAAHAAASFAATFWPYANAEASADSLASSQGGFTSRQISCPPSMAAIAAATVAAATAWWTAHGLLPLCAPLHSAFSSPPASAVVVSSMNTGEAPAARKDQKETTVENPPLLDQLPNGEYSEALQAQHSDSKSQAVSSSDSKSGDAKLTTSPKAAEHDKNEAISEHLDSNKTNGRRPVDRSSCGSNTTSSSDIETDALEKNEKGKEESLAPDANHLTEPSNRRSRSAGNPTDSWKEVSEEGRQAFRALFSREVLPQSFSPPLLEKDIQKDHKNEDHRKNMVDKEEDLDSNKYSPDQVGVKKNMPFLEYTHKEEGLLTIGLGQGKLKACRTGFKPYKRCSAEAKENRVGTTSNEGEEKRPKRMRLEGEAST 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2388 730 MobiDBLite consensus disorder prediction 700 730 - -
Prci12g2388 730 SMART sant 32 80 IPR001005 -
Prci12g2388 730 MobiDBLite consensus disorder prediction 624 651 - -
Prci12g2388 730 MobiDBLite consensus disorder prediction 452 599 - -
Prci12g2388 730 ProSiteProfiles Myb-like domain profile. 28 78 IPR001005 -
Prci12g2388 730 CDD SANT 35 78 IPR001005 -
Prci12g2388 730 MobiDBLite consensus disorder prediction 555 572 - -
Prci12g2388 730 Gene3D - 35 82 - -
Prci12g2388 730 ProSiteProfiles SANT domain profile. 31 82 IPR017884 -
Prci12g2388 730 MobiDBLite consensus disorder prediction 574 593 - -
Prci12g2388 730 Pfam Myb-like DNA-binding domain 33 76 IPR001005 -
Prci12g2388 730 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 82 IPR017930 -
Prci12g2388 730 PANTHER SWI/SNF COMPLEX-RELATED 21 613 - -
Prci12g2388 730 MobiDBLite consensus disorder prediction 511 535 - -
Prci12g2388 730 MobiDBLite consensus disorder prediction 93 149 - -
Prci12g2388 730 MobiDBLite consensus disorder prediction 611 658 - -
Prci12g2388 730 NCBIfam myb-like DNA-binding domain, SHAQKYF class 31 80 IPR006447 GO:0003677
Prci12g2388 730 SUPERFAMILY Homeodomain-like 27 83 IPR009057 -
Prci12g2388 730 MobiDBLite consensus disorder prediction 480 508 - -
Prci12g2388 730 FunFam protein REVEILLE 6 isoform X1 35 83 - -
Prci12g2388 730 MobiDBLite consensus disorder prediction 112 131 - -
Prci12g2388 730 MobiDBLite consensus disorder prediction 536 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2388 Prci-Chr12 41521278 41531674 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci12g2388 Myb_DNA-binding 2.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2388 K12133 - gmx:100101859 875.93