LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci12g2383	ATGGATTTCGGGGCCCCCAATCAGCCGCGCCTGGTCGGAGAGTACATGCTGGGACCGCAAATCGGGTCGGGTTCCTTCGCGGTGGTGTGGCGCTCAAGGCATCGTCACTCGGGTTTGGAGGTTGCAGTTAAGGAGATTGAGAAGAAACAGCTTAGCCCAAAAGTCAGTGAGAATCTGCTTAAAGAGATTTCTATTCTCAGCACCATCAATCACCCCAACATTATACGATTATTCGAAGCGATCCAGACCAATGATAGGATTTACCTTATTTTGGAGTATTGTAATGGTGGTGACCTTGCTACTTACATTCATCGACGCGGAAAAGTTTCACAACCCATTGCACGGCATTTTATGAGACACTTAGCTGCAGGCTTGATGGTACTCCAAGAAAATCACCTCATTCATAGAGATCTAAAACCTCAGAACTTACTATTGTCTAGCACTGGAGGTTTACCACTTCTAAAAATAGGCGATTTTGGTTTTGCAAGGTCTCTCACACCCCAAGGGTTGGCAGACACGTTATGTGGTTCACCATTGTACATGGCTCCAGAGATAATTCAAAATCAGAAGTATGATGCCAAGGCTGATTTATGGAGCGTTGGAGCCATATTGTTCCAGCTAGTGACTGGGAGGCCACCATTTGATGGAAATAATCAATTGCAGCTTTTTCAGAACATTTTAACATCCACTGAACTGCAGTTCCCACAAGAGTCTTTGAATGAGCTACATCCAGACTGTTTGGATCTTTGCAGAAGCCTGTTACGTCTAAACCCAGTTGAGCGATTGACATTCAAAGAGTTCTTTGGTCACAATTTCCTGAAGGAGCCCAGGTCAATTGTGAATGTTGAACGGTCTTCTGTACAACCACCAGAAAGATCAATGTTCCAGCAATGTGGTAGTATTTCAACATCTGACAAAAGGCCTCATTTGCATTCTGCTCTTCATCTGAAGAAATCAGTAGATGACCCAGTGGTAATTAGTTCAGCTGTCAATGAGACTGTGCTGTTACAAAGAAAGCATAGTGGAAATACTGCTGACACCAAGAGTGTTAAGGGCATAATTTCAAGAATTACTTGTGATAAGCAGGGACTTGGTAATGTTGCTCAATTGTCAGACCAGCCTCAAGCTTCTCATTTGATGGAGTCCATTGAGGAAGACTATGTCCTAGTTCCTCACTTTGCATCATTGGAGGTTTCCTCTGATTACTTTGAGGCATCTACGCAAGATAATATCACAAGCAGGGTTTCTATTTGTCCTTCAAAGAGGGTTGACCTTGAAGTTGGAGTTGCAAAGCAAACGAAGGATTTAGCCTTTTGCAATGTCGATAGAGAAAAAAGGTCAAAAAGTGGTAAACTTGAGACATCCTCTGTGTTTGCCGTCCCGAGGAAAGAGCAGGGTGCATCCTCAAAGCAGCCTTCAAGTAGGTTAGATTTGTTGCATCAATATGTACAGGCTCTCTCGGCACTTTCGCAAGAAAAATATGATGCAGGATTGTATCTAGAATCATTTGCAATCGAGCTGGTGGTTTTGGCTATATGGAAGAAAGCCCTTGAAATTTGTAACTCGTGGCTGGCCTCCATTGCTGAGGGCAAGTTGCCTGGAAGCACTTCAGGGAAGGAATCCACAATCTCAGACAGAGATGAAAGCATATCACAACCCATGCTAGAGAAAATAGATTTTAGTGATCCTTCAGCTGTGTCCTTGTGGGCCAAGAAAGGATTTATTTTTGCAGTTGATCATGCTGATAAACTTTCAAGCCTTATTCAAAATATGGATGGTGCAGCTGAGATGCCATATGCAATGGAGATCATATTTCAAAAGGTACTATCAATCGGCACAAGCGGTGCTATGAGTGTCTGGAAAATAGAGGCAAGGCAGCTGCATCATACTCAAAAGCGATGCTTCTACTTTCATTCGTTGTGA	1923	0.4332	MDFGAPNQPRLVGEYMLGPQIGSGSFAVVWRSRHRHSGLEVAVKEIEKKQLSPKVSENLLKEISILSTINHPNIIRLFEAIQTNDRIYLILEYCNGGDLATYIHRRGKVSQPIARHFMRHLAAGLMVLQENHLIHRDLKPQNLLLSSTGGLPLLKIGDFGFARSLTPQGLADTLCGSPLYMAPEIIQNQKYDAKADLWSVGAILFQLVTGRPPFDGNNQLQLFQNILTSTELQFPQESLNELHPDCLDLCRSLLRLNPVERLTFKEFFGHNFLKEPRSIVNVERSSVQPPERSMFQQCGSISTSDKRPHLHSALHLKKSVDDPVVISSAVNETVLLQRKHSGNTADTKSVKGIISRITCDKQGLGNVAQLSDQPQASHLMESIEEDYVLVPHFASLEVSSDYFEASTQDNITSRVSICPSKRVDLEVGVAKQTKDLAFCNVDREKRSKSGKLETSSVFAVPRKEQGASSKQPSSRLDLLHQYVQALSALSQEKYDAGLYLESFAIELVVLAIWKKALEICNSWLASIAEGKLPGSTSGKESTISDRDESISQPMLEKIDFSDPSAVSLWAKKGFIFAVDHADKLSSLIQNMDGAAEMPYAMEIIFQKVLSIGTSGAMSVWKIEARQLHHTQKRCFYFHSL	640

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci12g2383	640	CDD	STKc_ATG1_ULK_like	21	272	-	-
	Prci12g2383	640	ProSitePatterns	Protein kinases ATP-binding region signature.	21	44	IPR017441	GO:0005524
	Prci12g2383	640	Gene3D	Transferase(Phosphotransferase) domain 1	6	351	-	-
	Prci12g2383	640	PANTHER	SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED	8	535	IPR045269	GO:0004674\|GO:0006914
	Prci12g2383	640	SUPERFAMILY	Protein kinase-like (PK-like)	11	313	IPR011009	-
	Prci12g2383	640	FunFam	Serine/threonine-protein kinase ATG1	7	314	-	-
	Prci12g2383	640	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	133	145	IPR008271	GO:0004672\|GO:0006468
	Prci12g2383	640	Pfam	Protein kinase domain	17	273	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci12g2383	640	FunFam	Non-specific serine/threonine protein kinase	4	95	-	-
	Prci12g2383	640	ProSiteProfiles	Protein kinase domain profile.	15	273	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci12g2383	640	SMART	serkin_6	15	273	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci12g2383	Prci-Chr12	41508486	41520636	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci12g2383	7	276	CBL-interacting serine-threonine protein kinases	AT2G30360	37.319	4.40e-55	192

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-3	Prci12g2383		Pkinase	3.2e-72	CL0016