Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2379 ATGGAATTGACGCGAGAAGCTGCAAAAGGGTATTCTGATCATAGCAGAGAACAAGAATTACTGGAGGAGGAAGAGGATTTAGCTGAAACGAGTAACAAAGAAAGCAGTAAGCAATACTATCCCTTTTCTTCTTCATCGCCACCAAATCCATGGTTGGGAATGCTTCATCATCATCACGATCATCATCATCATCATCGATCTCCGGAGGCCACAACCCCTTGTGAATCTCACAATTCATCGTCTGGGTTAGGGTTATACCATCAGGATGCACCTTCTAACTCCAATTCCGCTATTAACAATCCCAAGAAGCTAGACTTGATGGACCTGTCGCTCGGCAACAAGGAAGAAGATGAAGGCAACAAGCCTATCGAGAAAGAGCACATGTTCGATAAGGTTGTGACGCCCAGCGATGTGGGCAAACTGAACCGCCTCGTGATACCGAAACAGCACGCGGAGAGGTACTTCCCGCTTGACTCCTCCTCCAACGAGAAAGGCCTTCTCTTGAATTTTGAGGACCGCAACGGCAAGCTATGGCGGTTCCGGTACTCCTACTGGAACAGCAGCCAGAGCTACGTCATGACCAAAGGGTGGAGCCGTTTTGTTAAAGACAAGAAGCTCGACGCCGGCGACATTGTATCGTTCCAACGCGGCCTCGGCGAATTGTATAGACACAGGTTGTACATAGACTGGAGGCGCCGGCCGGATTACGCGGCCACCGATCGTCATCGCCATGCCGCCACAATTACACCGTTGCTCCTTCCAAATCAGTACTCCGTCAGATGGGATGGTAGATTGTACTCTCTTCCCGCGGTGGCGCCGGCGCCGGCACCGCGTCACCACGAGCATTTCCAGCAAGCGAACTACAACAATTACTCCTTTCAGCAACACCAGCTACCTCAGTACCAGCGACAACATCACCATCACCATCACCACCAGCTCTATGGCGGAAGTCAAGGAAGTTATAATGAGGTGAATTTGGGATCTGGGTCGCTTTACTACCTCAGACCATTGTCGGCGCCGGGAGATCGGACTTTGATGGAGCAGCGAGAGGGAGGAGGCAATGTAAGTCCGATGATCATTGATTCCGTTCCGGTAGTCCATGGTAATTCTAGTGGTGGTAGAATTACTGATACTACTGCAAAGAAGCTTAGGCTATTTGGGGTGAATATGGAATGTTCTTCGTCATCAAACACAGTAGGACATGTGCCGATGGATGATACATCGCTTGCCTCACAGAATCTTCAGTACTTGACAGAATTCCAAGAAGAAGAAGATCCAATTTCTTCATCATCATCGTCAGCATCAAGGTTTGCGGATCAAAAGGGGAAAACTTCGGTGCTGTTTGATTTGAGCCCGTCCTTCCAATGCCGACAGTAG 1377 0.4946 MELTREAAKGYSDHSREQELLEEEEDLAETSNKESSKQYYPFSSSSPPNPWLGMLHHHHDHHHHHRSPEATTPCESHNSSSGLGLYHQDAPSNSNSAINNPKKLDLMDLSLGNKEEDEGNKPIEKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDSSSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGLGELYRHRLYIDWRRRPDYAATDRHRHAATITPLLLPNQYSVRWDGRLYSLPAVAPAPAPRHHEHFQQANYNNYSFQQHQLPQYQRQHHHHHHHQLYGGSQGSYNEVNLGSGSLYYLRPLSAPGDRTLMEQREGGGNVSPMIIDSVPVVHGNSSGGRITDTTAKKLRLFGVNMECSSSSNTVGHVPMDDTSLASQNLQYLTEFQEEEDPISSSSSSASRFADQKGKTSVLFDLSPSFQCRQ 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2379 458 MobiDBLite consensus disorder prediction 1 101 - -
Prci12g2379 458 SUPERFAMILY DNA-binding pseudobarrel domain 126 219 IPR015300 -
Prci12g2379 458 Gene3D - 123 245 IPR015300 -
Prci12g2379 458 MobiDBLite consensus disorder prediction 423 442 - -
Prci12g2379 458 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 23 408 IPR044800 GO:0003700
Prci12g2379 458 SMART B3_2 129 234 IPR003340 GO:0003677
Prci12g2379 458 MobiDBLite consensus disorder prediction 72 101 - -
Prci12g2379 458 ProSiteProfiles B3 DNA-binding domain profile. 129 234 IPR003340 GO:0003677
Prci12g2379 458 Pfam B3 DNA binding domain 129 233 IPR003340 GO:0003677
Prci12g2379 458 CDD B3_DNA 127 216 IPR003340 GO:0003677
Prci12g2379 458 MobiDBLite consensus disorder prediction 1 18 - -
Prci12g2379 458 FunFam B3 domain-containing protein 122 243 - -
Prci12g2379 458 Coils Coil 14 34 - -
Prci12g2379 458 MobiDBLite consensus disorder prediction 33 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2379 Prci-Chr12 41465543 41467590 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2379 106 398 RAV Transcription Factor Family AT2G46870 48.366 1.63e-80 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci12g2379 B3 1.4e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2379 K09287 - gmx:100781424 383.645