Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2371 ATGGCGAACGCAGTTTCTGTGCAGGAATATATGCCAGTGGGGTATAGATTCCGTCCAACAGATGAAGAACTCGTGGGTCACTACCTGAAGAACAAATTGAACGGTGATAATTCGGCTCTTCAGATTATCCGTGAGATTGACATTTGTAAGCACGAGCCCTGGGATTTACCTGAGTTTTCGATGATCAAGTCGGATGACCCAGAGTGGTTTTTCTTCAGTCCTCGTGATTTCAAGTACTCAAACAGTACTCGGTCTAACAGGGCAACATCGCGTGGCTTCTGGAAAGCCACTGGAAAAGACAGGGACATTAAGGCTCGTGGTACCGACGAGATCATTGGGACCAAGAAGACTCTTGTTTTCCATAGAGGTCGTGTTCCTAATGGCGTCAAGACCAACTGGGTCATTCATGAATATCAGGCTGTAACATTTCCTGTTGACCAGAGAACCTTTGTTCTATGCAAGTTAATGAAGAAACCTGAGAAAGCAGAAGGGAGAACCGATGCGTTAATCTGTGATGAAGGGGAGCCGAGTCGCTATATGTCTTCTGACCATGAAAATCTAGCTAGTGAGACTACAATTCCAAATACAGAACACCCAGTGGATGAAGTTGACTTAAGCCCATTACATTTTTCTCCAATAGTCAATGAGCAGGAATTTTCTTTCCCATTTTCCCCGAGGCTCAATTCCTATACTGGAAATGATGACAGCAGTATAAACCTGCCTTTTGAAACTACCGAGGAGGAAGAAGAAAATGCTGATGAGTTTGTGAATTCAATCTTAGCTGATGAGGAAATATTCCAGAGTGAGGGAGTGGGACATGCTTTTGTCCATGAGTTCACCCCCTCAGAAGCATTGAGAAAGGTGTACTATGGAAGCAGTGACACAGATGCAGAAGTTGTCTATGCACAGTATGGAAATATTGAAACTTCAACCAAATCGTATAAAACTGATGGTCCAAGGGAATGCATGCTAATGGCAAAGGTTAACAGCTCTGAACTTTCTTCCAACCAAGCAAAACGAGGGAAAAAGGGCAGATCCTTTCAAGATGATTTGGACTCTTCCTCTGGTGATTCAACCCTTGCTAGGCCACTTGAGATCAGTCAGATAGAGCTTGTTAGCTCTGCTTCCACTATAAAGGCATGCAAAACCCAATATCAACCAAGATCAGCCAGCTCTGTGTCACTGAGATATGGAGCAAGAAGATCTCAAACACATAGAAAGTCTTCAACCAAAGCAGCATATCATGAGGCTCAGAAAGAAACACCGGAGCATTCAAACAATGATAAGGGAGTAGCTCAGGTTACTGATAAAAGAAACACTTTAAAAGCCCCAAGTAGTCAATCCTCTGGTGTCAATAGGAGGAGTTCTTTCATTCAACTAGAGACACCATTATCAAGCCAAAACCTTAGTCCACCATCCGTATATCTTGGCAATGTTGTTATAGGGCTTTTCCTGTTTGTAGTCATTATTTGGGAAATGCTATCATATGGGAAGTTCTGTTAG 1503 0.4298 MANAVSVQEYMPVGYRFRPTDEELVGHYLKNKLNGDNSALQIIREIDICKHEPWDLPEFSMIKSDDPEWFFFSPRDFKYSNSTRSNRATSRGFWKATGKDRDIKARGTDEIIGTKKTLVFHRGRVPNGVKTNWVIHEYQAVTFPVDQRTFVLCKLMKKPEKAEGRTDALICDEGEPSRYMSSDHENLASETTIPNTEHPVDEVDLSPLHFSPIVNEQEFSFPFSPRLNSYTGNDDSSINLPFETTEEEEENADEFVNSILADEEIFQSEGVGHAFVHEFTPSEALRKVYYGSSDTDAEVVYAQYGNIETSTKSYKTDGPRECMLMAKVNSSELSSNQAKRGKKGRSFQDDLDSSSGDSTLARPLEISQIELVSSASTIKACKTQYQPRSASSVSLRYGARRSQTHRKSSTKAAYHEAQKETPEHSNNDKGVAQVTDKRNTLKAPSSQSSGVNRRSSFIQLETPLSSQNLSPPSVYLGNVVIGLFLFVVIIWEMLSYGKFC 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2371 500 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 362 - -
Prci12g2371 500 Pfam No apical meristem (NAM) protein 12 139 IPR003441 GO:0003677|GO:0006355
Prci12g2371 500 MobiDBLite consensus disorder prediction 392 432 - -
Prci12g2371 500 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Prci12g2371 500 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
Prci12g2371 500 MobiDBLite consensus disorder prediction 331 359 - -
Prci12g2371 500 MobiDBLite consensus disorder prediction 409 426 - -
Prci12g2371 500 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2371 Prci-Chr12 41382874 41386614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2371 4 173 NAC Transcription Factor Family AT4G35580 56.571 3.69e-62 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci12g2371 NAM 6.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2371 - - pcin:129287580 969.148