Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2346 ATGGACTCTATCAAGTCCTTCAAGGGCTACGGTAAGGTAGATGAGCTCGACCAGAGAGCTTTCCAGAAGAAGACACGTCGCCGCCTCATTATCCTCGGCGTTTCTTGCATTCTCCTCGTCGCCGTCGTCGCCGCAGTCGTAGCCACCGTCATTCACAGGCGCGGCCGCTCTTCCTCTTCCTCCGACGACGTCCCTCCCACCGAGTTGACTCCGGCGTCGTCCCTCAGAGCCGTCTGCGGTGTCACTCAGTACCCCAGCTCGTGCTTGTCCAGCATCTCGTCCCTCCATAATTCTAACACTACCGATCCGGAGCTTCTCTTCAAGCTCTCTCTCCGAGTCGCCGTTGACGAGCTCTCCAATCTTTCGAAGCTCCCTTCCAAGCTCAAAGCCAATGTGAAGGATCCGCGGGTTCAAAAGGCGATCGAGGTGTGCGGAATCGTGTTCGACGACGCGGTGGATCGACTCAACGAGTCGATCTCATCGCTTGACGGCGGCGGCAACGGCGGGAAGATCCTTTCGCCGTCGAAGATCGGTGACGTTGAGACGTGGCTGAGCGCTGCGATTACGTACCAGGATACCTGTCTGGACGCTTTGGAAGAGTTGAATTCCACCGCCGCAAGCGAGATTCTCGGGGATCTGAAAACCGCGATGAAGAACTCAACCGAGTTCGCGAGTAATAGCTTGGCCATTGTGACCAAGGTTCTACGCCTTCTCTCGAATTTCAACTTCCCGATCCATCGGAGGCTACTGGGATTCGGGGGATCCGATTCGGGTTTTCCGGATTGGGTTGGCCCGGCAGAGAGGAGGTTGTTGGAGGATACAAACGCAACGGTGCCGCATGCGGTGGTGGCAAAGGATAACAGCGGGCAGTATAAGACGATAAAGGAAGCGTTGGCGGCCGTGAAGAAGAAGAGCCTAACGAGGTTTGTGATTCATGTGAAGGAAGGGGTTTACAAAGAGAATATCGATTTGGATAAGAACACTTGGAATGTGATGATATACGGTGATGGCAAGACCAAGACCATCATCTCCAGCAACCTGAACTTCATCGACGGCACGCCTACCTTTTCAACTGCTACTTTCGCTGTCAAGGGAAAGGGATTCATCGCCAAGGACATAGGATTCATCAACACCGCCGGAGCAGCGAAGCACCAGGCGGTGGCGTTCCGCTCAGGCTCTGACCGATCCGTGTTCTTCAGGTGCTCTTTTGACGGCTTCCAAGACACTCTCTACGCCCACTCCAACCGTCAATTCTACCGAGAATGCGATATCACCGGCACAATCGACTTCATCTTCGGTAATTCCGCCGTCGTCTTCCAGAACTGCAACATCAAGCCGAGACAACCCTTACCAAATCAATTCAACACTATCACGGCTCAGGGCAAAAAGGATCCTAACCAGAACACGGGTATAATCATCCAGAAATCCTCGATCTCTGCTCTTGACAATCTCAACGCTCCGACGTACCTTGGCCGACCGTGGAAGGAGTACTCCACCACGGTGATTATGCAGTCTGATATAGGGTCATTCTTGGATCCAGCGGGCTGGAAAGAATGGGTTCCGGGCGTGGAGCCCGCGAGAACCATATTCTACGCGGAATACAAGAATTCGGGAGCCGGGTCGGGCGTGGATAATAGGATCAAATGGGCGGGTTATAAGTCGAGCCTATCGGATGATGAGGCAGCGAAGTTCACGGTTCAGTCTTTTATCCAAGGAAGTGACTGGTTGCCAGATACCGCTGTGGAGTTCGAATCCACATTGTAA 1764 0.5363 MDSIKSFKGYGKVDELDQRAFQKKTRRRLIILGVSCILLVAVVAAVVATVIHRRGRSSSSSDDVPPTELTPASSLRAVCGVTQYPSSCLSSISSLHNSNTTDPELLFKLSLRVAVDELSNLSKLPSKLKANVKDPRVQKAIEVCGIVFDDAVDRLNESISSLDGGGNGGKILSPSKIGDVETWLSAAITYQDTCLDALEELNSTAASEILGDLKTAMKNSTEFASNSLAIVTKVLRLLSNFNFPIHRRLLGFGGSDSGFPDWVGPAERRLLEDTNATVPHAVVAKDNSGQYKTIKEALAAVKKKSLTRFVIHVKEGVYKENIDLDKNTWNVMIYGDGKTKTIISSNLNFIDGTPTFSTATFAVKGKGFIAKDIGFINTAGAAKHQAVAFRSGSDRSVFFRCSFDGFQDTLYAHSNRQFYRECDITGTIDFIFGNSAVVFQNCNIKPRQPLPNQFNTITAQGKKDPNQNTGIIIQKSSISALDNLNAPTYLGRPWKEYSTTVIMQSDIGSFLDPAGWKEWVPGVEPARTIFYAEYKNSGAGSGVDNRIKWAGYKSSLSDDEAAKFTVQSFIQGSDWLPDTAVEFESTL 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2346 587 ProSitePatterns Pectinesterase signature 2. 424 433 IPR033131 -
Prci12g2346 587 PANTHER PECTINESTERASE 38 577 - -
Prci12g2346 587 Pfam Pectinesterase 281 572 IPR000070 GO:0030599|GO:0042545
Prci12g2346 587 CDD PMEI-like_3 77 233 - -
Prci12g2346 587 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 234 IPR035513 -
Prci12g2346 587 NCBIfam pectinesterase inhibitor domain 68 233 IPR006501 GO:0004857
Prci12g2346 587 FunFam Pectinesterase 71 235 - -
Prci12g2346 587 FunFam Pectinesterase 274 587 - -
Prci12g2346 587 Pfam Plant invertase/pectin methylesterase inhibitor 74 230 IPR006501 GO:0004857
Prci12g2346 587 SUPERFAMILY Pectin lyase-like 280 584 IPR011050 -
Prci12g2346 587 Gene3D Invertase/pectin methylesterase inhibitor family protein 73 234 IPR035513 -
Prci12g2346 587 ProSitePatterns Pectinesterase signature 1. 305 324 IPR018040 -
Prci12g2346 587 SMART PMEI_2 70 230 IPR006501 GO:0004857
Prci12g2346 587 Gene3D - 275 587 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2346 Prci-Chr12 41154886 41158954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2346 1 581 Carbohydrate Esterase AT1G53840 58.844 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2346 - - qsa:O6P43_027479 852.432