LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci12g2346	ATGGACTCTATCAAGTCCTTCAAGGGCTACGGTAAGGTAGATGAGCTCGACCAGAGAGCTTTCCAGAAGAAGACACGTCGCCGCCTCATTATCCTCGGCGTTTCTTGCATTCTCCTCGTCGCCGTCGTCGCCGCAGTCGTAGCCACCGTCATTCACAGGCGCGGCCGCTCTTCCTCTTCCTCCGACGACGTCCCTCCCACCGAGTTGACTCCGGCGTCGTCCCTCAGAGCCGTCTGCGGTGTCACTCAGTACCCCAGCTCGTGCTTGTCCAGCATCTCGTCCCTCCATAATTCTAACACTACCGATCCGGAGCTTCTCTTCAAGCTCTCTCTCCGAGTCGCCGTTGACGAGCTCTCCAATCTTTCGAAGCTCCCTTCCAAGCTCAAAGCCAATGTGAAGGATCCGCGGGTTCAAAAGGCGATCGAGGTGTGCGGAATCGTGTTCGACGACGCGGTGGATCGACTCAACGAGTCGATCTCATCGCTTGACGGCGGCGGCAACGGCGGGAAGATCCTTTCGCCGTCGAAGATCGGTGACGTTGAGACGTGGCTGAGCGCTGCGATTACGTACCAGGATACCTGTCTGGACGCTTTGGAAGAGTTGAATTCCACCGCCGCAAGCGAGATTCTCGGGGATCTGAAAACCGCGATGAAGAACTCAACCGAGTTCGCGAGTAATAGCTTGGCCATTGTGACCAAGGTTCTACGCCTTCTCTCGAATTTCAACTTCCCGATCCATCGGAGGCTACTGGGATTCGGGGGATCCGATTCGGGTTTTCCGGATTGGGTTGGCCCGGCAGAGAGGAGGTTGTTGGAGGATACAAACGCAACGGTGCCGCATGCGGTGGTGGCAAAGGATAACAGCGGGCAGTATAAGACGATAAAGGAAGCGTTGGCGGCCGTGAAGAAGAAGAGCCTAACGAGGTTTGTGATTCATGTGAAGGAAGGGGTTTACAAAGAGAATATCGATTTGGATAAGAACACTTGGAATGTGATGATATACGGTGATGGCAAGACCAAGACCATCATCTCCAGCAACCTGAACTTCATCGACGGCACGCCTACCTTTTCAACTGCTACTTTCGCTGTCAAGGGAAAGGGATTCATCGCCAAGGACATAGGATTCATCAACACCGCCGGAGCAGCGAAGCACCAGGCGGTGGCGTTCCGCTCAGGCTCTGACCGATCCGTGTTCTTCAGGTGCTCTTTTGACGGCTTCCAAGACACTCTCTACGCCCACTCCAACCGTCAATTCTACCGAGAATGCGATATCACCGGCACAATCGACTTCATCTTCGGTAATTCCGCCGTCGTCTTCCAGAACTGCAACATCAAGCCGAGACAACCCTTACCAAATCAATTCAACACTATCACGGCTCAGGGCAAAAAGGATCCTAACCAGAACACGGGTATAATCATCCAGAAATCCTCGATCTCTGCTCTTGACAATCTCAACGCTCCGACGTACCTTGGCCGACCGTGGAAGGAGTACTCCACCACGGTGATTATGCAGTCTGATATAGGGTCATTCTTGGATCCAGCGGGCTGGAAAGAATGGGTTCCGGGCGTGGAGCCCGCGAGAACCATATTCTACGCGGAATACAAGAATTCGGGAGCCGGGTCGGGCGTGGATAATAGGATCAAATGGGCGGGTTATAAGTCGAGCCTATCGGATGATGAGGCAGCGAAGTTCACGGTTCAGTCTTTTATCCAAGGAAGTGACTGGTTGCCAGATACCGCTGTGGAGTTCGAATCCACATTGTAA	1764	0.5363	MDSIKSFKGYGKVDELDQRAFQKKTRRRLIILGVSCILLVAVVAAVVATVIHRRGRSSSSSDDVPPTELTPASSLRAVCGVTQYPSSCLSSISSLHNSNTTDPELLFKLSLRVAVDELSNLSKLPSKLKANVKDPRVQKAIEVCGIVFDDAVDRLNESISSLDGGGNGGKILSPSKIGDVETWLSAAITYQDTCLDALEELNSTAASEILGDLKTAMKNSTEFASNSLAIVTKVLRLLSNFNFPIHRRLLGFGGSDSGFPDWVGPAERRLLEDTNATVPHAVVAKDNSGQYKTIKEALAAVKKKSLTRFVIHVKEGVYKENIDLDKNTWNVMIYGDGKTKTIISSNLNFIDGTPTFSTATFAVKGKGFIAKDIGFINTAGAAKHQAVAFRSGSDRSVFFRCSFDGFQDTLYAHSNRQFYRECDITGTIDFIFGNSAVVFQNCNIKPRQPLPNQFNTITAQGKKDPNQNTGIIIQKSSISALDNLNAPTYLGRPWKEYSTTVIMQSDIGSFLDPAGWKEWVPGVEPARTIFYAEYKNSGAGSGVDNRIKWAGYKSSLSDDEAAKFTVQSFIQGSDWLPDTAVEFESTL	587

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci12g2346	587	ProSitePatterns	Pectinesterase signature 2.	424	433	IPR033131	-
	Prci12g2346	587	PANTHER	PECTINESTERASE	38	577	-	-
	Prci12g2346	587	Pfam	Pectinesterase	281	572	IPR000070	GO:0030599\|GO:0042545
	Prci12g2346	587	CDD	PMEI-like_3	77	233	-	-
	Prci12g2346	587	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	75	234	IPR035513	-
	Prci12g2346	587	NCBIfam	pectinesterase inhibitor domain	68	233	IPR006501	GO:0004857
	Prci12g2346	587	FunFam	Pectinesterase	71	235	-	-
	Prci12g2346	587	FunFam	Pectinesterase	274	587	-	-
	Prci12g2346	587	Pfam	Plant invertase/pectin methylesterase inhibitor	74	230	IPR006501	GO:0004857
	Prci12g2346	587	SUPERFAMILY	Pectin lyase-like	280	584	IPR011050	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci12g2346	Prci-Chr12	41154886	41158954	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci12g2346	1	581	Carbohydrate Esterase	AT1G53840	58.844	0.0	686

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci12g2346	-		-	qsa:O6P43_027479	852.432

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