Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2336 ATGATGTTTCACCCTGGAGGAATTCCTAAACAAACTTGTAGTCTACTTGCTGTCACATGTGGCAAAAGCGTTGAGCATGAGTTCGAGAAGAAACCCACTAAGAATCAGCTCAAATATCCTTTTCCCGAGTTAACTTCTTCAGGGCGTCTGGAGATTCAAACTCTAAAAAATCCAGAAAAAGAACAGTTTCGAAAAGTTCTCGAGTCTTATCAACCAAATTTTGTATATTTGCAAGGAGAACAGCTTGCTAATGGTGAAGTTGGTTCTTTGGTCTGGCAAGGCGAAGAATTGGCCACCTCTGAAGCTATATTAGAGCTCTTTGATCCCACATTGCCAACAGCTGTGTACTTGGAAATCCCAAATGGGGAAAAATTGGCAGAAGCTCTTCATCTTAAGGGAGTTGCATATGTGATTTATTGGAAAAATGCTTTTTCTTGTTATGCTGCTTGCCATTTTCGTCAAGCATTTCTTTCAGTGGTGCAGAGCTCTTCTACGCATACGTGGGATGCCTTTCATCTTGCCCGTGCTTCTTTTGAGTTTTACTGTGTTCAAAACAATCAAGTCCTTCCCGGTGAGAAACATGATTCTAGTGACAATGTAGGGCCACACCTTCTTGGAGACTGTCTTCAGATCAATGTTGACCCTCCTGAGGTGTGTGAAGATGATGAGGAAAGTTCCTCAGGCAGTCTTCCTGCTATAAAGATACATGATGATGAAGTGAACTTGAGATTTCTCATCTGTGGTGCGCCTTCCATTGTGGATGAGTCACTGTTGAGATCATTGGAGGATGGACTCAAATCACTCTTAATCATTGAAATACGGGGGAGCAAGCTCCATGGCAAGTTTAGTGCTCCCCCACCACCTCTTCAAGCAGCCACTTTTTCTCGAGGAGTTGTTACCATGCGATGTGATATATCAACCTGTAGTTCAGCCCATATCTCACTTCTGGTGTCTGGTAGTGCTCAAACGTGCTTCAATGATCAGTTATTGGAGAATCATATAAAAAATGAGATAATTGAGAAGAATCAACTAGTTCATGCCCAAATTGATGAGGGAAACAAACAGCATGTCTCTGAACCTCGTAGATCTGCCTCAATTGCTTGTGGAGCAGCTGTATTTGAAGTTTGCTTGAAGCTTCCTCTATGGGCTTCGCAGGTTTTGCGACAGCTAGCTCCAAATGTTACTTATCGAAGTTTAGTTGTACTTGGGATTGCTAGCATTCAGGGGTTGCCTATTGCTTCATTTGGGGAAGATGATGCTGAGCGCCTTCTTTTCTTTTATCAAAGTCAAGGGAAAGATAGTGGTGGAGGCAAAATCATTTTCAGCAGCCCCCCTGGTTGGTTGAAACCACCCCCTCCTACTAGAAAAAGGTATGAGCCAAGTCAAGAGGCAAGCCCTGGCCTTCAAGATGGTGTTTTAACTGGGCAAAGTACTATTCAAAGAATAGATGAAGAGGAAAAGGATACAAGAATGGTGAATGGAATTGGCACATCCTTAACTCCAGCTAGGCAGAGATTAAAAGTGTCTGCAATGAGGCCCATCCCTCATGTTCATCGCCATAGAATGACACTCTTTTCTGGACCTTCTGAGACAGATGGTTATGATGGTGCCCAAGTTGAAGCTAGTTTACCAGTTGTTGTCCCTGCAAAGCGCAGTACTACTGGTTCAAGTTCTGCAACACAGAGAAGGTCATTTTCAGGCTCAGCTCAGTCTAAACAGATTATTTCCTTGAACCCACTGCCCTTGAAAAAACATGGTTGTGGCAGAGGCCCGATCCAAACTTGCTCTGAGGAGGAATTTTTGAAAGATGTCATGGAGTTTCTAATGCTTCGAGGACATAGTCGATTAATCCCTCAAGGAGGGCTTGCTGAGTTTCCTGATGCCATACTCAATGGGAAACGACTTGATCTCTACAACTTGTATAAAGAGGTGGTTACCAGGGGAGGATTCCATGTTGGCAATGGCATCAATTGGAAAGGGCAAATCTTCTCAAAGATGCGCAATTACACAACCACCAATAGAATGACTGGCGTTGGAAATACACTCAAAAGGCATTATGAAACTTACCTTCTCGAATATGAGTTAGCTCATGATGATGTTGATGGGGAGTGCTGCTTGTTGTGTCACAGTAGTGCTGCCGGGGATTGGGTGAATTGTGGCATATGTGGCGAGTGGGCCCACTTTGGCTGTGACAGACGTCAAGGTCTTGGTGCATTTAAGGATTATGCAAAAACAGATGGTCTAGAATATATTTGTCCTCATTGTAGCATTACAAATTTCAAGAAGAAACCCTCAGGTGTTGCTAATGGGTTTTCTCAGGGGTCAATGGCATCAAAACTCCTTTGA 2346 0.4339 MMFHPGGIPKQTCSLLAVTCGKSVEHEFEKKPTKNQLKYPFPELTSSGRLEIQTLKNPEKEQFRKVLESYQPNFVYLQGEQLANGEVGSLVWQGEELATSEAILELFDPTLPTAVYLEIPNGEKLAEALHLKGVAYVIYWKNAFSCYAACHFRQAFLSVVQSSSTHTWDAFHLARASFEFYCVQNNQVLPGEKHDSSDNVGPHLLGDCLQINVDPPEVCEDDEESSSGSLPAIKIHDDEVNLRFLICGAPSIVDESLLRSLEDGLKSLLIIEIRGSKLHGKFSAPPPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLENHIKNEIIEKNQLVHAQIDEGNKQHVSEPRRSASIACGAAVFEVCLKLPLWASQVLRQLAPNVTYRSLVVLGIASIQGLPIASFGEDDAERLLFFYQSQGKDSGGGKIIFSSPPGWLKPPPPTRKRYEPSQEASPGLQDGVLTGQSTIQRIDEEEKDTRMVNGIGTSLTPARQRLKVSAMRPIPHVHRHRMTLFSGPSETDGYDGAQVEASLPVVVPAKRSTTGSSSATQRRSFSGSAQSKQIISLNPLPLKKHGCGRGPIQTCSEEEFLKDVMEFLMLRGHSRLIPQGGLAEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSITNFKKKPSGVANGFSQGSMASKLL 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2336 781 MobiDBLite consensus disorder prediction 550 570 - -
Prci12g2336 781 Pfam ARID/BRIGHT DNA binding domain 597 694 IPR001606 GO:0003677
Prci12g2336 781 SUPERFAMILY FYVE/PHD zinc finger 697 761 IPR011011 -
Prci12g2336 781 CDD PHD_ARID4_like 704 755 - -
Prci12g2336 781 CDD ARID 596 694 - -
Prci12g2336 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 698 760 IPR013083 -
Prci12g2336 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 8 777 IPR042293 -
Prci12g2336 781 SMART ARID_2 591 694 - -
Prci12g2336 781 Gene3D - 592 697 IPR036431 GO:0003677
Prci12g2336 781 MobiDBLite consensus disorder prediction 441 474 - -
Prci12g2336 781 SUPERFAMILY ARID-like 594 709 IPR036431 GO:0003677
Prci12g2336 781 SMART bright_3 595 699 IPR001606 GO:0003677
Prci12g2336 781 ProSiteProfiles ARID domain profile. 594 698 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2336 Prci-Chr12 41110720 41119848 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2336 2 770 ARID Transcription Factor Family AT3G43240 60.285 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Prci12g2336 ARID 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2336 - - gmx:100816540 1286.94