Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2335 ATGATGTTTCACCCTGGAGGAATTCCTAAACAAACTTGTAGTCTACTTGCTGTCACATGTGGCAAAAGCGTTGAGCATGAGTTCGAGAAGAAACCCACTAAGAATCAGCTCAAATATCCTTTTCCCGAGTTAACTTCTTCAGGGCGTCTGGAGCTTGCTAATGGTGAAGTTGGTTCTTTGGTCTGGCAAGGCGAAGAATTGGCCACCTCTGAAGCTATATTAGAGCTCTTTGATCCCACATTGCCAACAGCTGTGTACTTGGAAATCCCAAATGGGGAAAAATTGGCAGAAGCTCTTCATCTTAAGGGAGTTGCATATGTGATTTATTGGAAAAATGCTTTTTCTTGTTATGCTGCTTGCCATTTTCGTCAAGCATTTCTTTCAGTGGTGCAGAGCTCTTCTACGCATACGTGGGATGCCTTTCATCTTGCCCGTGCTTCTTTTGAGTTTTACTGTGTTCAAAACAATCAAGTCCTTCCCGGTGAGAAACATGATTCTAGTGACAATGTAGGGCCACACCTTCTTGGAGACTGTCTTCAGATCAATGTTGACCCTCCTGAGGTGTGTGAAGATGATGAGGAAAGTTCCTCAGGCAGTCTTCCTGCTATAAAGATACATGATGATGAAGTGAACTTGAGATTTCTCATCTGTGGTGCGCCTTCCATTGTGGATGAGTCACTGTTGAGATCATTGGAGGATGGACTCAAATCACTCTTAATCATTGAAATACGGGGGAGCAAGCTCCATGGCAAGTTTAGTGCTCCCCCACCACCTCTTCAAGCAGCCACTTTTTCTCGAGGAGTTGTTACCATGCGATGTGATATATCAACCTGTAGTTCAGCCCATATCTCACTTCTGGTGTCTGGTAGTGCTCAAACGTGCTTCAATGATCAGTTATTGGAGAATCATATAAAAAATGAGATAATTGAGAAGAATCAACTAGTTCATGCCCAAATTGATGAGGGAAACAAACAGCATGTCTCTGAACCTCGTAGATCTGCCTCAATTGCTTGTGGAGCAGCTGTATTTGAAGTTTGCTTGAAGCTTCCTCTATGGGCTTCGCAGGTTTTGCGACAGCTAGCTCCAAATGTTACTTATCGAAGTTTAGTTGTACTTGGGATTGCTAGCATTCAGGGGTTGCCTATTGCTTCATTTGGGGAAGATGATGCTGAGCGCCTTCTTTTCTTTTATCAAAGTCAAGGGAAAGATAGTGGTGGAGGCAAAATCATTTTCAGCAGCCCCCCTGGTTGGTTGAAACCACCCCCTCCTACTAGAAAAAGGTATGAGCCAAGTCAAGAGGCAAGCCCTGGCCTTCAAGATGGTGTTTTAACTGGGCAAAGTACTATTCAAAGAATAGATGAAGAGGAAAAGGATACAAGAATGGTGAATGGAATTGGCACATCCTTAACTCCAGCTAGGCAGAGATTAAAAGTGTCTGCAATGAGGCCCATCCCTCATGTTCATCGCCATAGAATGACACTCTTTTCTGGACCTTCTGAGACAGATGGTTATGATGGTGCCCAAGTTGAAGCTAGTTTACCAGTTGTTGTCCCTGCAAAGCGCAGTACTACTGGTTCAAGTTCTGCAACACAGAGAAGGTCATTTTCAGGCTCAGCTCAGTCTAAACAGATTATTTCCTTGAACCCACTGCCCTTGAAAAAACATGGTTGTGGCAGAGGCCCGATCCAAACTTGCTCTGAGGAGGAATTTTTGAAAGATGTCATGGAGTTTCTAATGCTTCGAGGACATAGTCGATTAATCCCTCAAGGAGGGCTTGCTGAGTTTCCTGATGCCATACTCAATGGGAAACGACTTGATCTCTACAACTTGTATAAAGAGGTGGTTACCAGGGGAGGATTCCATGTTGGCAATGGCATCAATTGGAAAGGGCAAATCTTCTCAAAGATGCGCAATTACACAACCACCAATAGAATGACTGGCGTTGGAAATACACTCAAAAGGCATTATGAAACTTACCTTCTCGAATATGAGTTAGCTCATGATGATGTTGATGGGGAGTGCTGCTTGTTGTGTCACAGTAGTGCTGCCGGGGATTGGGTGAATTGTGGCATATGTGGCGAGTGGGCCCACTTTGGCTGTGACAGACGTCAAGGTCTTGGTGCATTTAAGGATTATGCAAAAACAGATGGTCTAGAATATATTTGTCCTCATTGTAGCATTACAAATTTCAAGAAGAAACCCTCAGGTGTTGCTAATGGGTTTTCTCAGGGGTCAATGGCATCAAAACTCCTTTGA 2256 0.4388 MMFHPGGIPKQTCSLLAVTCGKSVEHEFEKKPTKNQLKYPFPELTSSGRLELANGEVGSLVWQGEELATSEAILELFDPTLPTAVYLEIPNGEKLAEALHLKGVAYVIYWKNAFSCYAACHFRQAFLSVVQSSSTHTWDAFHLARASFEFYCVQNNQVLPGEKHDSSDNVGPHLLGDCLQINVDPPEVCEDDEESSSGSLPAIKIHDDEVNLRFLICGAPSIVDESLLRSLEDGLKSLLIIEIRGSKLHGKFSAPPPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLENHIKNEIIEKNQLVHAQIDEGNKQHVSEPRRSASIACGAAVFEVCLKLPLWASQVLRQLAPNVTYRSLVVLGIASIQGLPIASFGEDDAERLLFFYQSQGKDSGGGKIIFSSPPGWLKPPPPTRKRYEPSQEASPGLQDGVLTGQSTIQRIDEEEKDTRMVNGIGTSLTPARQRLKVSAMRPIPHVHRHRMTLFSGPSETDGYDGAQVEASLPVVVPAKRSTTGSSSATQRRSFSGSAQSKQIISLNPLPLKKHGCGRGPIQTCSEEEFLKDVMEFLMLRGHSRLIPQGGLAEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSITNFKKKPSGVANGFSQGSMASKLL 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2335 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 668 730 IPR013083 -
Prci12g2335 751 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 8 52 IPR042293 -
Prci12g2335 751 SUPERFAMILY FYVE/PHD zinc finger 667 731 IPR011011 -
Prci12g2335 751 Pfam ARID/BRIGHT DNA binding domain 567 664 IPR001606 GO:0003677
Prci12g2335 751 SMART bright_3 565 669 IPR001606 GO:0003677
Prci12g2335 751 ProSiteProfiles ARID domain profile. 564 668 IPR001606 GO:0003677
Prci12g2335 751 MobiDBLite consensus disorder prediction 411 444 - -
Prci12g2335 751 MobiDBLite consensus disorder prediction 520 540 - -
Prci12g2335 751 SUPERFAMILY ARID-like 564 679 IPR036431 GO:0003677
Prci12g2335 751 SMART ARID_2 561 664 - -
Prci12g2335 751 Gene3D - 562 667 IPR036431 GO:0003677
Prci12g2335 751 CDD ARID 566 664 - -
Prci12g2335 751 CDD PHD_ARID4_like 674 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2335 Prci-Chr12 41110719 41119848 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2335 2 740 ARID Transcription Factor Family AT3G43240 58.473 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Prci12g2335 ARID 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2335 - - gmx:100816540 1220.68