LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci12g2334	ATGATGTTTCACCCTGGAGGAATTCCTAAACAAACTTGTAGTCTACTTGCTGTCACATGTGGCAAAAGCGTTGAGCATGAGTTCGAGAAGAAACCCACTAAGAATCAGCTCAAATATCCTTTTCCCGAGTTAACTTCTTCAGGGCGTCTGGAGCCTTTAATGCAGATTCAAACTCTAAAAAATCCAGAAAAAGAACAGTTTCGAAAAGTTCTCGAGTCTTATCAACCAAATTTTGTATATTTGCAAGGAGAACAGCTTGCTAATGGTGAAGTTGGTTCTTTGGTCTGGCAAGGCGAAGAATTGGCCACCTCTGAAGCTATATTAGAGCTCTTTGATCCCACATTGCCAACAGCTGTGTACTTGGAAATCCCAAATGGGGAAAAATTGGCAGAAGCTCTTCATCTTAAGGGAGTTGCATATGTGATTTATTGGAAAAATGCTTTTTCTTGTTATGCTGCTTGCCATTTTCGTCAAGCATTTCTTTCAGTGGTGCAGAGCTCTTCTACGCATACGTGGGATGCCTTTCATCTTGCCCGTGCTTCTTTTGAGTTTTACTGTGTTCAAAACAATCAAGTCCTTCCCGGTGAGAAACATGATTCTAGTGACAATGTAGGGCCACACCTTCTTGGAGACTGTCTTCAGATCAATGTTGACCCTCCTGAGGTGTGTGAAGATGATGAGGAAAGTTCCTCAGGCAGTCTTCCTGCTATAAAGATACATGATGATGAAGTGAACTTGAGATTTCTCATCTGTGGTGCGCCTTCCATTGTGGATGAGTCACTGTTGAGATCATTGGAGGATGGACTCAAATCACTCTTAATCATTGAAATACGGGGGAGCAAGCTCCATGGCAAGTTTAGTGCTCCCCCACCACCTCTTCAAGCAGCCACTTTTTCTCGAGGAGTTGTTACCATGCGATGTGATATATCAACCTGTAGTTCAGCCCATATCTCACTTCTGGTGTCTGGTAGTGCTCAAACGTGCTTCAATGATCAGTTATTGGAGAATCATATAAAAAATGAGATAATTGAGAAGAATCAACTAGTTCATGCCCAAATTGATGAGGGAAACAAACAGCATGTCTCTGAACCTCGTAGATCTGCCTCAATTGCTTGTGGAGCAGCTGTATTTGAAGTTTGCTTGAAGCTTCCTCTATGGGCTTCGCAGGTTTTGCGACAGCTAGCTCCAAATGTTACTTATCGAAGTTTAGTTGTACTTGGGATTGCTAGCATTCAGGGGTTGCCTATTGCTTCATTTGGGGAAGATGATGCTGAGCGCCTTCTTTTCTTTTATCAAAGTCAAGGGAAAGATAGTGGTGGAGGCAAAATCATTTTCAGCAGCCCCCCTGGTTGGTTGAAACCACCCCCTCCTACTAGAAAAAGGTATGAGCCAAGTCAAGAGGCAAGCCCTGGCCTTCAAGATGGTGTTTTAACTGGGCAAAGTACTATTCAAAGAATAGATGAAGAGGAAAAGGATACAAGAATGGTGAATGGAATTGGCACATCCTTAACTCCAGCTAGGCAGAGATTAAAAGTGTCTGCAATGAGGCCCATCCCTCATGTTCATCGCCATAGAATGACACTCTTTTCTGGACCTTCTGAGACAGATGGTTATGATGGTGCCCAAGTTGAAGCTAGTTTACCAGTTGTTGTCCCTGCAAAGCGCAGTACTACTGGTTCAAGTTCTGCAACACAGAGAAGGTCATTTTCAGGCTCAGCTCAGTCTAAACAGATTATTTCCTTGAACCCACTGCCCTTGAAAAAACATGGTTGTGGCAGAGGCCCGATCCAAACTTGCTCTGAGGAGGAATTTTTGAAAGATGTCATGGAGTTTCTAATGCTTCGAGGACATAGTCGATTAATCCCTCAAGGAGGGCTTGCTGAGTTTCCTGATGCCATACTCAATGGGAAACGACTTGATCTCTACAACTTGTATAAAGAGGTGGTTACCAGGGGAGGATTCCATGTTGGCAATGGCATCAATTGGAAAGGGCAAATCTTCTCAAAGATGCGCAATTACACAACCACCAATAGAATGACTGGCGTTGGAAATACACTCAAAAGGCATTATGAAACTTACCTTCTCGAATATGAGTTAGCTCATGATGATGTTGATGGGGAGTGCTGCTTGTTGTGTCACAGTAGTGCTGCCGGGGATTGGGTGAATTGTGGCATATGTGGCGAGTGGGCCCACTTTGGCTGTGACAGACGTCAAGGTCTTGGTGCATTTAAGGATTATGCAAAAACAGATGGTCTAGAATATATTTGTCCTCATTGTAGCATTACAAATTTCAAGAAGAAACCCTCAGGTGTTGCTAATGGGTTTTCTCAGGGGTCAATGGCATCAAAACTCCTTTGA	2358	0.4338	MMFHPGGIPKQTCSLLAVTCGKSVEHEFEKKPTKNQLKYPFPELTSSGRLEPLMQIQTLKNPEKEQFRKVLESYQPNFVYLQGEQLANGEVGSLVWQGEELATSEAILELFDPTLPTAVYLEIPNGEKLAEALHLKGVAYVIYWKNAFSCYAACHFRQAFLSVVQSSSTHTWDAFHLARASFEFYCVQNNQVLPGEKHDSSDNVGPHLLGDCLQINVDPPEVCEDDEESSSGSLPAIKIHDDEVNLRFLICGAPSIVDESLLRSLEDGLKSLLIIEIRGSKLHGKFSAPPPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLENHIKNEIIEKNQLVHAQIDEGNKQHVSEPRRSASIACGAAVFEVCLKLPLWASQVLRQLAPNVTYRSLVVLGIASIQGLPIASFGEDDAERLLFFYQSQGKDSGGGKIIFSSPPGWLKPPPPTRKRYEPSQEASPGLQDGVLTGQSTIQRIDEEEKDTRMVNGIGTSLTPARQRLKVSAMRPIPHVHRHRMTLFSGPSETDGYDGAQVEASLPVVVPAKRSTTGSSSATQRRSFSGSAQSKQIISLNPLPLKKHGCGRGPIQTCSEEEFLKDVMEFLMLRGHSRLIPQGGLAEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSITNFKKKPSGVANGFSQGSMASKLL	785

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci12g2334	785	SMART	bright_3	599	703	IPR001606	GO:0003677
	Prci12g2334	785	MobiDBLite	consensus disorder prediction	554	574	-	-
	Prci12g2334	785	Pfam	ARID/BRIGHT DNA binding domain	601	698	IPR001606	GO:0003677
	Prci12g2334	785	SUPERFAMILY	FYVE/PHD zinc finger	701	765	IPR011011	-
	Prci12g2334	785	SUPERFAMILY	ARID-like	598	713	IPR036431	GO:0003677
	Prci12g2334	785	ProSiteProfiles	ARID domain profile.	598	702	IPR001606	GO:0003677
	Prci12g2334	785	CDD	PHD_ARID4_like	708	759	-	-
	Prci12g2334	785	SMART	ARID_2	595	698	-	-
	Prci12g2334	785	CDD	ARID	600	698	-	-
	Prci12g2334	785	Gene3D	-	596	701	IPR036431	GO:0003677

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci12g2334	Prci-Chr12	41110719	41119848	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci12g2334	2	774	ARID Transcription Factor Family	AT3G43240	59.974	0.0	930

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	ARID	Prci12g2334		ARID	1.5e-14	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci12g2334	-		-	gmx:100816540	1281.16

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