Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2334 ATGATGTTTCACCCTGGAGGAATTCCTAAACAAACTTGTAGTCTACTTGCTGTCACATGTGGCAAAAGCGTTGAGCATGAGTTCGAGAAGAAACCCACTAAGAATCAGCTCAAATATCCTTTTCCCGAGTTAACTTCTTCAGGGCGTCTGGAGCCTTTAATGCAGATTCAAACTCTAAAAAATCCAGAAAAAGAACAGTTTCGAAAAGTTCTCGAGTCTTATCAACCAAATTTTGTATATTTGCAAGGAGAACAGCTTGCTAATGGTGAAGTTGGTTCTTTGGTCTGGCAAGGCGAAGAATTGGCCACCTCTGAAGCTATATTAGAGCTCTTTGATCCCACATTGCCAACAGCTGTGTACTTGGAAATCCCAAATGGGGAAAAATTGGCAGAAGCTCTTCATCTTAAGGGAGTTGCATATGTGATTTATTGGAAAAATGCTTTTTCTTGTTATGCTGCTTGCCATTTTCGTCAAGCATTTCTTTCAGTGGTGCAGAGCTCTTCTACGCATACGTGGGATGCCTTTCATCTTGCCCGTGCTTCTTTTGAGTTTTACTGTGTTCAAAACAATCAAGTCCTTCCCGGTGAGAAACATGATTCTAGTGACAATGTAGGGCCACACCTTCTTGGAGACTGTCTTCAGATCAATGTTGACCCTCCTGAGGTGTGTGAAGATGATGAGGAAAGTTCCTCAGGCAGTCTTCCTGCTATAAAGATACATGATGATGAAGTGAACTTGAGATTTCTCATCTGTGGTGCGCCTTCCATTGTGGATGAGTCACTGTTGAGATCATTGGAGGATGGACTCAAATCACTCTTAATCATTGAAATACGGGGGAGCAAGCTCCATGGCAAGTTTAGTGCTCCCCCACCACCTCTTCAAGCAGCCACTTTTTCTCGAGGAGTTGTTACCATGCGATGTGATATATCAACCTGTAGTTCAGCCCATATCTCACTTCTGGTGTCTGGTAGTGCTCAAACGTGCTTCAATGATCAGTTATTGGAGAATCATATAAAAAATGAGATAATTGAGAAGAATCAACTAGTTCATGCCCAAATTGATGAGGGAAACAAACAGCATGTCTCTGAACCTCGTAGATCTGCCTCAATTGCTTGTGGAGCAGCTGTATTTGAAGTTTGCTTGAAGCTTCCTCTATGGGCTTCGCAGGTTTTGCGACAGCTAGCTCCAAATGTTACTTATCGAAGTTTAGTTGTACTTGGGATTGCTAGCATTCAGGGGTTGCCTATTGCTTCATTTGGGGAAGATGATGCTGAGCGCCTTCTTTTCTTTTATCAAAGTCAAGGGAAAGATAGTGGTGGAGGCAAAATCATTTTCAGCAGCCCCCCTGGTTGGTTGAAACCACCCCCTCCTACTAGAAAAAGGTATGAGCCAAGTCAAGAGGCAAGCCCTGGCCTTCAAGATGGTGTTTTAACTGGGCAAAGTACTATTCAAAGAATAGATGAAGAGGAAAAGGATACAAGAATGGTGAATGGAATTGGCACATCCTTAACTCCAGCTAGGCAGAGATTAAAAGTGTCTGCAATGAGGCCCATCCCTCATGTTCATCGCCATAGAATGACACTCTTTTCTGGACCTTCTGAGACAGATGGTTATGATGGTGCCCAAGTTGAAGCTAGTTTACCAGTTGTTGTCCCTGCAAAGCGCAGTACTACTGGTTCAAGTTCTGCAACACAGAGAAGGTCATTTTCAGGCTCAGCTCAGTCTAAACAGATTATTTCCTTGAACCCACTGCCCTTGAAAAAACATGGTTGTGGCAGAGGCCCGATCCAAACTTGCTCTGAGGAGGAATTTTTGAAAGATGTCATGGAGTTTCTAATGCTTCGAGGACATAGTCGATTAATCCCTCAAGGAGGGCTTGCTGAGTTTCCTGATGCCATACTCAATGGGAAACGACTTGATCTCTACAACTTGTATAAAGAGGTGGTTACCAGGGGAGGATTCCATGTTGGCAATGGCATCAATTGGAAAGGGCAAATCTTCTCAAAGATGCGCAATTACACAACCACCAATAGAATGACTGGCGTTGGAAATACACTCAAAAGGCATTATGAAACTTACCTTCTCGAATATGAGTTAGCTCATGATGATGTTGATGGGGAGTGCTGCTTGTTGTGTCACAGTAGTGCTGCCGGGGATTGGGTGAATTGTGGCATATGTGGCGAGTGGGCCCACTTTGGCTGTGACAGACGTCAAGGTCTTGGTGCATTTAAGGATTATGCAAAAACAGATGGTCTAGAATATATTTGTCCTCATTGTAGCATTACAAATTTCAAGAAGAAACCCTCAGGTGTTGCTAATGGGTTTTCTCAGGGGTCAATGGCATCAAAACTCCTTTGA 2358 0.4338 MMFHPGGIPKQTCSLLAVTCGKSVEHEFEKKPTKNQLKYPFPELTSSGRLEPLMQIQTLKNPEKEQFRKVLESYQPNFVYLQGEQLANGEVGSLVWQGEELATSEAILELFDPTLPTAVYLEIPNGEKLAEALHLKGVAYVIYWKNAFSCYAACHFRQAFLSVVQSSSTHTWDAFHLARASFEFYCVQNNQVLPGEKHDSSDNVGPHLLGDCLQINVDPPEVCEDDEESSSGSLPAIKIHDDEVNLRFLICGAPSIVDESLLRSLEDGLKSLLIIEIRGSKLHGKFSAPPPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLENHIKNEIIEKNQLVHAQIDEGNKQHVSEPRRSASIACGAAVFEVCLKLPLWASQVLRQLAPNVTYRSLVVLGIASIQGLPIASFGEDDAERLLFFYQSQGKDSGGGKIIFSSPPGWLKPPPPTRKRYEPSQEASPGLQDGVLTGQSTIQRIDEEEKDTRMVNGIGTSLTPARQRLKVSAMRPIPHVHRHRMTLFSGPSETDGYDGAQVEASLPVVVPAKRSTTGSSSATQRRSFSGSAQSKQIISLNPLPLKKHGCGRGPIQTCSEEEFLKDVMEFLMLRGHSRLIPQGGLAEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSITNFKKKPSGVANGFSQGSMASKLL 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2334 785 SMART bright_3 599 703 IPR001606 GO:0003677
Prci12g2334 785 MobiDBLite consensus disorder prediction 554 574 - -
Prci12g2334 785 Pfam ARID/BRIGHT DNA binding domain 601 698 IPR001606 GO:0003677
Prci12g2334 785 SUPERFAMILY FYVE/PHD zinc finger 701 765 IPR011011 -
Prci12g2334 785 SUPERFAMILY ARID-like 598 713 IPR036431 GO:0003677
Prci12g2334 785 ProSiteProfiles ARID domain profile. 598 702 IPR001606 GO:0003677
Prci12g2334 785 CDD PHD_ARID4_like 708 759 - -
Prci12g2334 785 SMART ARID_2 595 698 - -
Prci12g2334 785 CDD ARID 600 698 - -
Prci12g2334 785 Gene3D - 596 701 IPR036431 GO:0003677
Prci12g2334 785 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 8 781 IPR042293 -
Prci12g2334 785 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 702 764 IPR013083 -
Prci12g2334 785 MobiDBLite consensus disorder prediction 445 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2334 Prci-Chr12 41110719 41119848 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2334 2 774 ARID Transcription Factor Family AT3G43240 59.974 0.0 930
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Prci12g2334 ARID 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2334 - - gmx:100816540 1281.16