Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2332 ATGTGCGGAGGTGCTATTATCTCCGACTTCATTCAGACGCCGGAGGCCAGGTCTCGCCGGCTTACAGCCGATATCCTCTGGCCGGATTTGAAGAAACCCAGTTCGGGGAAGCGATTCTCGAAGCCCACTAGGTCTGGATTCGGGGATTCGGATGGTGATTTCGAAGCTGATTTTAGAGAATTCAAGGACGACTCTGATATCGATGAGTTGGATGTGGATGATGATTTGCTGTTCGATTTCAAGACCTTAGGTTTCTCCGCTGTCAAACCCCTCAAGCCTTCCGGATCCCTCTCTCGTGGATCCGGTCCCATAAAATCTGTGAAATTCAAGGGAAAAGCTAACAAGTCTGAGAAAAGAAAGAGGAAGAATCTGTATAGGGGAATCCGTCAGCGCCCATGGGGAAAATGGGCAGCTGAGATCCGTGACCCAAGGAAAGGTGTCCGTGTCTGGCTTGGAACCTTCAACACTGCTGAAGAAGCAGCTAGAGCCTATGATGCTGAAGCACGTAGGATTCGCGGTAAGAAAGCCAAGGTGAACTTTCCTGATGAGGCTTTAGGCTCTCCCCCAAAACAATATGATGTAAAACACTCTGTTCAGCCCATTATGAACCAGAAATTCAATGTTGGGAACAACGCAAAGGACTACATCTGTCCCATGGGTCTGATGGACCAGAAACCACTGGTTAATCAGTATGCTAACATGGGAGGCTTACCCAGCTGTGGAGATGGGCTCACGTCTTTCACACCATTGGATGATGTTAATGTTCCTGTTTGTTTCAGTTCAGATCAAGCAAGTAATTCGTATGATTATTCTGGTATCGGGTGGGGTGAACAGGGCCTAAAGACACCTGACATCTCGTCAATGCTTTCTGCTTCTATAGAAGATGAATTTCAAGCTGTTAGTGATGCCAACCAGAATAATAACATTCTTGACTGCCAGGGTGTGCTGTCTCTGGAAAATGATTCTGCAAAGACACTGTCTGAGGAACTTGCAGATATTGAATCCCAGTTGCGGTTCTTTCAGACGCCTTACCCTGAAGGGACTTGGGATGATGCTTCATTAGAAACCTTGCTTGGTGAAAACACAGCTCAGGATGGTGAAAACGCAATGGACTTTTGGAGCTTTGATGCTGGGGGAATTTTCTGA 1146 0.4703 MCGGAIISDFIQTPEARSRRLTADILWPDLKKPSSGKRFSKPTRSGFGDSDGDFEADFREFKDDSDIDELDVDDDLLFDFKTLGFSAVKPLKPSGSLSRGSGPIKSVKFKGKANKSEKRKRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDEALGSPPKQYDVKHSVQPIMNQKFNVGNNAKDYICPMGLMDQKPLVNQYANMGGLPSCGDGLTSFTPLDDVNVPVCFSSDQASNSYDYSGIGWGEQGLKTPDISSMLSASIEDEFQAVSDANQNNNILDCQGVLSLENDSAKTLSEELADIESQLRFFQTPYPEGTWDDASLETLLGENTAQDGENAMDFWSFDAGGIF 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2332 381 CDD AP2 125 182 IPR001471 GO:0003700|GO:0006355
Prci12g2332 381 Coils Coil 316 336 - -
Prci12g2332 381 MobiDBLite consensus disorder prediction 93 113 - -
Prci12g2332 381 MobiDBLite consensus disorder prediction 33 52 - -
Prci12g2332 381 Gene3D AP2/ERF domain 124 182 IPR036955 GO:0003700|GO:0006355
Prci12g2332 381 SUPERFAMILY DNA-binding domain 124 183 IPR016177 GO:0003677
Prci12g2332 381 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Prci12g2332 381 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Prci12g2332 381 PANTHER DNA-BINDING DOMAIN 108 280 IPR044808 GO:0003700|GO:0009873
Prci12g2332 381 SMART rav1_2 124 187 IPR001471 GO:0003700|GO:0006355
Prci12g2332 381 FunFam Ethylene-responsive transcription factor 2 123 182 - -
Prci12g2332 381 Pfam AP2 domain 125 173 IPR001471 GO:0003700|GO:0006355
Prci12g2332 381 ProSiteProfiles AP2/ERF domain profile. 124 181 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2332 Prci-Chr12 41078578 41081709 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2332 1 381 AP2-EREBP Transcription Factor Family AT1G53910 44.557 2.75e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci12g2332 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2332 K09286 - zju:107435298 363.999