Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2331 ATGTGCGGAGGTGCTATTATCTCCGACTTCATTCAGACGCCGGAGGCCAGGTCTCGCCGGCTTACAGCCGATATCCTCTGGCCGGATTTGAAGAAACCCAGTTCGGGGAAGCGATTCTCGAAGCCCACTAGGTCTGGATTCGGGGATTCGGATGGTGATTTCGAAGCTGATTTTAGAGAATTCAAGGACGACTCTGATATCGATGAGTTGGATGTGGATGATGATTTGCTGTTCGATTTCAAGACCTTAGGTTTCTCCGCTGTCAAACCCCTCAAGCCTTCCGGATCCCTCTCTCGTGGATCCGGTCCCATAAAATCTGTGAAATTCAAGGGAAAAGCTAACAAGTCTGAGAAAAGAAAGAGGAAGAATCTGTATAGGGGAATCCGTCAGCGCCCATGGGGAAAATGGGCAGCTGAGATCCGTGACCCAAGGAAAGGTGTCCGTGTCTGGCTTGGAACCTTCAACACTGCTGAAGAAGCAGCTAGAGCCTATGATGCTGAAGCACGTAGGATTCGCGGTAAGAAAGCCAAGGGTGTGCTGTCTCTGGAAAATGATTCTGCAAAGACACTGTCTGAGGAACTTGCAGATATTGAATCCCAGTTGCGGTTCTTTCAGACGCCTTACCCTGAAGGGACTTGGGATGATGCTTCATTAGAAACCTTGCTTGGTGAAAACACAGCTCAGGATGGTGAAAACGCAATGGACTTTTGGAGCTTTGATGCTGGGGGAATTTTCTGA 738 0.4905 MCGGAIISDFIQTPEARSRRLTADILWPDLKKPSSGKRFSKPTRSGFGDSDGDFEADFREFKDDSDIDELDVDDDLLFDFKTLGFSAVKPLKPSGSLSRGSGPIKSVKFKGKANKSEKRKRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKGVLSLENDSAKTLSEELADIESQLRFFQTPYPEGTWDDASLETLLGENTAQDGENAMDFWSFDAGGIF 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2331 245 Gene3D AP2/ERF domain 124 179 IPR036955 GO:0003700|GO:0006355
Prci12g2331 245 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Prci12g2331 245 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Prci12g2331 245 CDD AP2 125 176 IPR001471 GO:0003700|GO:0006355
Prci12g2331 245 PANTHER DNA-BINDING DOMAIN 105 177 IPR044808 GO:0003700|GO:0009873
Prci12g2331 245 MobiDBLite consensus disorder prediction 33 52 - -
Prci12g2331 245 Coils Coil 180 200 - -
Prci12g2331 245 SUPERFAMILY DNA-binding domain 124 176 IPR016177 GO:0003677
Prci12g2331 245 FunFam Ethylene-responsive transcription factor 2 123 181 - -
Prci12g2331 245 SMART rav1_2 124 187 IPR001471 GO:0003700|GO:0006355
Prci12g2331 245 Pfam AP2 domain 125 173 IPR001471 GO:0003700|GO:0006355
Prci12g2331 245 ProSiteProfiles AP2/ERF domain profile. 124 183 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2331 Prci-Chr12 41078578 41081710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2331 1 189 AP2-EREBP Transcription Factor Family AT1G53910 57.143 3.48e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci12g2331 AP2 7.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2331 K09286 - mnt:21386046 217.238