Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2305 ATGGAGGTGTGTGAAATTTACAGTGAAGCTGAAGGGTCCGATCCTGATCCTTTTTCGGATGATTTGGAAGGAGATCCCGATTTTGACGTAACCGAAGAAACCAAGAGCAAGTTTTCCAACCTATCAATTGAAAAGAAGGCGGCTAAGACGAGTATTTTTTATGGTGAGGTTTCGCGGACGGAGATTTACTCAGAAGAGCAGAAGACTGAGCCCGGTCATGATGAGGAAGTACAAAATATCATAGAAGCGGGAGAGTTGGAGAAACTAAAAGTACCTGAATGCAAGCTGTATCTGAGGAAGAATGGGCTGAGATTGACAGGAAACAAGGACACACTCATTCAGAGAATTCGGGAGCATCTAGAGATTACAAATGGCGGAGGGGAGTGGAAGTACCCGCCTTCTAGCTTTGTTCAGAATTGTAAAGGTGATGCATGCACCGGTGATGTTGTTCTGTTTGAGCAAAATGTCTACGAAACGTTCAGCATAGCATCTAGGAGTGCCAGTGGTCCACCTTGTGGCAAGAGGATTGTTGCAGGTCGTATAGTGAAGGAAAGCTATGGTGCTGAGAAGCAGCAGCATACATTTACGATTGAGGTACTGTGGAGCAAGGGAGAGAAGCCTCTTCCTCCACTCTATCCCCTGCTGATCAAGGGTCGAAACCTTTATAGGTTGAAGACTCTGAGACAGAGATGGGATGATGAGGGGGCAAGGCGGAAAATTTTGACGGAAAAACACTCGAGGGGAGATGTTGCAAGGGCCAACAGAGAAGCAAGGAAACAAGAAAAGGAGAGGAGAAAATCAATCAGGGAAAACAGGGTTTCCAAAAAGGAGTTATCAAGTAATCAAGCTCAATCACATCCACCCACGACCAAGTCACAGTATCAACATCAAGAATCAAGATGCATCAATCCAGCAAACCAATCTCAATCACATCCACCCACGGCCATGTCACAGTATCACCATAAAGAATCAAGACGCATCAATCCTGCAAACCATTCTCAATCACATCCACTCACGACCATGTCACGGTATCAACATCAAGAATCAAGATGCATCAATCCACCAAAACCAAAATTTTTCTTTGACCCAGGCGAAAGGATTGCAACAAGGCCTGACCATTTCAAAGAGAAACTCATTATTAATGAGAACTACCCTTGCAGTGCTGTGACAAACAGGTTTGCAGAAGGGACTTACCGTAGAAAACCTTTTACGAGTGCAAATCACTTGTTTCCGTCGACCCTAAATAGAGAAACCTTTAAGCAAAAGCAACCTTGCAAATATTATGCCCAAGGGAGGTGTCATTTTGGAGACAACTGCAAATTTTCACATGGTGTGAGATCATAG 1344 0.4427 MEVCEIYSEAEGSDPDPFSDDLEGDPDFDVTEETKSKFSNLSIEKKAAKTSIFYGEVSRTEIYSEEQKTEPGHDEEVQNIIEAGELEKLKVPECKLYLRKNGLRLTGNKDTLIQRIREHLEITNGGGEWKYPPSSFVQNCKGDACTGDVVLFEQNVYETFSIASRSASGPPCGKRIVAGRIVKESYGAEKQQHTFTIEVLWSKGEKPLPPLYPLLIKGRNLYRLKTLRQRWDDEGARRKILTEKHSRGDVARANREARKQEKERRKSIRENRVSKKELSSNQAQSHPPTTKSQYQHQESRCINPANQSQSHPPTAMSQYHHKESRRINPANHSQSHPLTTMSRYQHQESRCINPPKPKFFFDPGERIATRPDHFKEKLIINENYPCSAVTNRFAEGTYRRKPFTSANHLFPSTLNRETFKQKQPCKYYAQGRCHFGDNCKFSHGVRS 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2305 447 Coils Coil 250 270 - -
Prci12g2305 447 ProSiteProfiles SAP motif profile. 86 120 IPR003034 -
Prci12g2305 447 MobiDBLite consensus disorder prediction 277 317 - -
Prci12g2305 447 MobiDBLite consensus disorder prediction 242 337 - -
Prci12g2305 447 SUPERFAMILY CCCH zinc finger 420 444 IPR036855 GO:0046872
Prci12g2305 447 MobiDBLite consensus disorder prediction 242 276 - -
Prci12g2305 447 SUPERFAMILY SAP domain 74 121 IPR036361 -
Prci12g2305 447 MobiDBLite consensus disorder prediction 14 28 - -
Prci12g2305 447 PANTHER SAP DOMAIN-CONTAINING PROTEIN 22 445 - -
Prci12g2305 447 Pfam CCCH-type zinc finger 424 444 IPR041367 -
Prci12g2305 447 ProSiteProfiles Zinc finger C3H1-type profile. 419 446 IPR000571 GO:0046872
Prci12g2305 447 Gene3D SAP domain 61 130 IPR036361 -
Prci12g2305 447 Gene3D - 404 447 - -
Prci12g2305 447 SMART sap_9 86 120 IPR003034 -
Prci12g2305 447 MobiDBLite consensus disorder prediction 1 35 - -
Prci12g2305 447 Pfam SAP domain 86 120 IPR003034 -
Prci12g2305 447 SMART c3hfinal6 420 445 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2305 Prci-Chr12 40814813 40819019 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci12g2305 SAP 3.6e-10 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2305 - - pcin:129288862 906.746