Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2292 ATGTGGGATCAGAAAACTGGACGATCAAGAGGGTTTGGATTTGTTTCATTCCGTAATCAACAGGATGCACAAGGCGCTATAAATGATTTAACTGGTAAATGGCTTGGTAGTAGACAAATACGCTGCAACTGGGCAGCAAAAGGTGCTGGTTCTAGTGAGGATAAACAAAGTTCAGATGCTAAAAGTGTCGTTGAACTCACAAATGGCTCATCTGAAGATGGTAAAGAGACAAGTAACACTGATGCCCCAGAGAATAATCCTCAATATACTACTGTCTATGTGGGAAATCTTGCACCAGAGGTAACCCAGCTTGATCTCCATCGCCACTTTCATAATCTTGGGGCTGGTGCGATAGAGGAGGTTCGAGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCAATGGCTATTCAGATGGGGAATGCCCAGTCTTTTCTCCTGGGTAAACAAATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCTCCTGGAACTGCTTCAAATCCTCTTCCACCACCTGCTGCTGCTGCTGCACCTATGCCTGGCTTCTCTGCTTCTGATCTTCTGGCCTATGAGCGTCAGCTAGCAATGAGCAAGATGGGTGGTATCCATGCCCTGATGCATCCCCAAGGGCAGCAACCTCTTAAACAGGCAGCACTCGGAGGAAGTCAGGCAATTTATGATGGGGGGTTCCAGAATGTTGCTGCACAACAAATGATGTACTACCAGTGA 750 0.4733 MWDQKTGRSRGFGFVSFRNQQDAQGAINDLTGKWLGSRQIRCNWAAKGAGSSEDKQSSDAKSVVELTNGSSEDGKETSNTDAPENNPQYTTVYVGNLAPEVTQLDLHRHFHNLGAGAIEEVRVQRDKGFGFVRYSTHAEAAMAIQMGNAQSFLLGKQIKCSWGSKPTPPGTASNPLPPPAAAAAPMPGFSASDLLAYERQLAMSKMGGIHALMHPQGQQPLKQAALGGSQAIYDGGFQNVAAQQMMYYQ 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2292 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 47 IPR000504 GO:0003723
Prci12g2292 249 MobiDBLite consensus disorder prediction 50 89 - -
Prci12g2292 249 Gene3D - 1 63 IPR012677 -
Prci12g2292 249 SMART rrm1_1 91 161 IPR000504 GO:0003723
Prci12g2292 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 165 IPR000504 GO:0003723
Prci12g2292 249 FunFam Oligouridylate-binding protein 1C 67 169 - -
Prci12g2292 249 SUPERFAMILY RNA-binding domain, RBD 1 52 IPR035979 GO:0003676
Prci12g2292 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 41 IPR000504 GO:0003723
Prci12g2292 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 153 IPR000504 GO:0003723
Prci12g2292 249 Gene3D - 65 169 IPR012677 -
Prci12g2292 249 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 1 168 - -
Prci12g2292 249 MobiDBLite consensus disorder prediction 48 89 - -
Prci12g2292 249 SUPERFAMILY RNA-binding domain, RBD 80 172 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2292 Prci-Chr12 40713246 40720151 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2292 7 153 Eukaryotic Initiation Factors Gene Family AT1G49760 30.921 1.47e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2292 K13201 - qsu:112037244 437.573