Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Prci12g2291 | ATGCAGAATCCCAGGCTGAAGCAGCAGCAAGCTCTTATGCAACAAGCTCTTATGCAACAACAGTCTCTCTACCACCCTGGCCTCTTAGCTGCTCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTTCTTGCCGCAGTGTGTATGTGGGGAACATTCATCCACAGGTAACAGAGTCGCTGCTTCAGGAACTTTTTGCAAGTAATGGTCCAGTTGAAGGTTGTAAACTTATTAGAAAAGAGAAGTCATCCTATGGATTTGTTCACTATTTTGATCGTAGATCAGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCACTTGTTTGGTCAGCCGATCAAAGTTAACTGGGCATATGCTAGCGGGCAGAGAGAGGATACATCAGGTCATTACAACATATTTGTTGGTGATCTTAGTCCTGAGGTTACTGATGCTACATTGTTTGCTTGCTTTTCCGTCTACCCCAGTTGCTCAGATGCAAGGGTTATGTGGGATCAGAAAACTGGACGATCAAGAGGGTTTGGATTTGTTTCATTCCGTAATCAACAGGATGCACAAGGCGCTATAAATGATTTAACTGGTAAATGGCTTGGTAGTAGACAAATACGCTGCAACTGGGCAGCAAAAGGTGCTGGTTCTAGTGAGGATAAACAAAGTTCAGATGCTAAAAGTGTCGTTGAACTCACAAATGGCTCATCTGAAGATGGTAAAGAGACAAGTAACACTGATGCCCCAGAGAATAATCCTCAATATACTACTGTCTATGTGGGAAATCTTGCACCAGAGGTAACCCAGCTTGATCTCCATCGCCACTTTCATAATCTTGGGGCTGGTGCGATAGAGGAGGTTCGAGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCAATGGCTATTCAGATGGGGAATGCCCAGTCTTTTCTCCTGGGTAAACAAATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCTCCTGGAACTGCTTCAAATCCTCTTCCACCACCTGCTGCTGCTGCTGCACCTATGCCTGGCTTCTCTGCTTCTGATCTTCTGGCCTATGAGCGTCAGCTAGCAATGAGCAAGATGGGTGGTATCCATGCCCTGATGCATCCCCAAGGGCAGCAACCTCTTAAACAGGCAGCACTCGGAGGAAGTCAGGCAATTTATGATGGGGGGTTCCAGAATGTTGCTGCACAACAAATGATGTACTACCAGTGA | 1254 | 0.4625 | MQNPRLKQQQALMQQALMQQQSLYHPGLLAAPQIEPIPSGNLPPGFDPSSCRSVYVGNIHPQVTESLLQELFASNGPVEGCKLIRKEKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQGAINDLTGKWLGSRQIRCNWAAKGAGSSEDKQSSDAKSVVELTNGSSEDGKETSNTDAPENNPQYTTVYVGNLAPEVTQLDLHRHFHNLGAGAIEEVRVQRDKGFGFVRYSTHAEAAMAIQMGNAQSFLLGKQIKCSWGSKPTPPGTASNPLPPPAAAAAPMPGFSASDLLAYERQLAMSKMGGIHALMHPQGQQPLKQAALGGSQAIYDGGFQNVAAQQMMYYQ | 417 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Prci12g2291 | 417 | SUPERFAMILY | RNA-binding domain, RBD | 247 | 340 | IPR035979 | GO:0003676 | |
Prci12g2291 | 417 | Gene3D | - | 1 | 134 | IPR012677 | - | |
Prci12g2291 | 417 | SUPERFAMILY | RNA-binding domain, RBD | 131 | 219 | IPR035979 | GO:0003676 | |
Prci12g2291 | 417 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 258 | 333 | IPR000504 | GO:0003723 | |
Prci12g2291 | 417 | MobiDBLite | consensus disorder prediction | 218 | 257 | - | - | |
Prci12g2291 | 417 | SMART | rrm1_1 | 259 | 329 | IPR000504 | GO:0003723 | |
Prci12g2291 | 417 | SMART | rrm1_1 | 138 | 211 | IPR000504 | GO:0003723 | |
Prci12g2291 | 417 | SMART | rrm1_1 | 53 | 122 | IPR000504 | GO:0003723 | |
Prci12g2291 | 417 | FunFam | oligouridylate-binding protein 1-like isoform X2 | 135 | 230 | - | - | |
Prci12g2291 | 417 | Gene3D | - | 135 | 236 | IPR012677 | - | |
Prci12g2291 | 417 | FunFam | oligouridylate-binding protein 1B-like isoform X2 | 1 | 134 | - | - | |
Prci12g2291 | 417 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 52 | 126 | IPR000504 | GO:0003723 | |
Prci12g2291 | 417 | SUPERFAMILY | RNA-binding domain, RBD | 36 | 130 | IPR035979 | GO:0003676 | |
Prci12g2291 | 417 | Gene3D | - | 237 | 337 | IPR012677 | - | |
Prci12g2291 | 417 | FunFam | Oligouridylate-binding protein 1C | 235 | 337 | - | - | |
Prci12g2291 | 417 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 139 | 209 | IPR000504 | GO:0003723 | |
Prci12g2291 | 417 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 54 | 120 | IPR000504 | GO:0003723 | |
Prci12g2291 | 417 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 260 | 321 | IPR000504 | GO:0003723 | |
Prci12g2291 | 417 | MobiDBLite | consensus disorder prediction | 216 | 257 | - | - | |
Prci12g2291 | 417 | CDD | RRM1_PUB1 | 54 | 124 | - | - | |
Prci12g2291 | 417 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 50 | 336 | - | - | |
Prci12g2291 | 417 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 137 | 215 | IPR000504 | GO:0003723 | |
Prci12g2291 | 417 | CDD | RRM2_PUB1 | 136 | 215 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Prci12g2291 | Prci-Chr12 | 40713002 | 40720151 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Prci12g2291 | 47 | 334 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 29.373 | 3.42e-23 | 100 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Prci12g2291 | K13201 | - | cit:102616329 | 734.176 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Prci12g2291 | 12 | 40713002 | 40720151 | Prci12g2291 | 12 | 40713002 | 40720151 | ECH |