Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2291 ATGCAGAATCCCAGGCTGAAGCAGCAGCAAGCTCTTATGCAACAAGCTCTTATGCAACAACAGTCTCTCTACCACCCTGGCCTCTTAGCTGCTCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTTCTTGCCGCAGTGTGTATGTGGGGAACATTCATCCACAGGTAACAGAGTCGCTGCTTCAGGAACTTTTTGCAAGTAATGGTCCAGTTGAAGGTTGTAAACTTATTAGAAAAGAGAAGTCATCCTATGGATTTGTTCACTATTTTGATCGTAGATCAGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCACTTGTTTGGTCAGCCGATCAAAGTTAACTGGGCATATGCTAGCGGGCAGAGAGAGGATACATCAGGTCATTACAACATATTTGTTGGTGATCTTAGTCCTGAGGTTACTGATGCTACATTGTTTGCTTGCTTTTCCGTCTACCCCAGTTGCTCAGATGCAAGGGTTATGTGGGATCAGAAAACTGGACGATCAAGAGGGTTTGGATTTGTTTCATTCCGTAATCAACAGGATGCACAAGGCGCTATAAATGATTTAACTGGTAAATGGCTTGGTAGTAGACAAATACGCTGCAACTGGGCAGCAAAAGGTGCTGGTTCTAGTGAGGATAAACAAAGTTCAGATGCTAAAAGTGTCGTTGAACTCACAAATGGCTCATCTGAAGATGGTAAAGAGACAAGTAACACTGATGCCCCAGAGAATAATCCTCAATATACTACTGTCTATGTGGGAAATCTTGCACCAGAGGTAACCCAGCTTGATCTCCATCGCCACTTTCATAATCTTGGGGCTGGTGCGATAGAGGAGGTTCGAGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCAATGGCTATTCAGATGGGGAATGCCCAGTCTTTTCTCCTGGGTAAACAAATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCTCCTGGAACTGCTTCAAATCCTCTTCCACCACCTGCTGCTGCTGCTGCACCTATGCCTGGCTTCTCTGCTTCTGATCTTCTGGCCTATGAGCGTCAGCTAGCAATGAGCAAGATGGGTGGTATCCATGCCCTGATGCATCCCCAAGGGCAGCAACCTCTTAAACAGGCAGCACTCGGAGGAAGTCAGGCAATTTATGATGGGGGGTTCCAGAATGTTGCTGCACAACAAATGATGTACTACCAGTGA 1254 0.4625 MQNPRLKQQQALMQQALMQQQSLYHPGLLAAPQIEPIPSGNLPPGFDPSSCRSVYVGNIHPQVTESLLQELFASNGPVEGCKLIRKEKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQGAINDLTGKWLGSRQIRCNWAAKGAGSSEDKQSSDAKSVVELTNGSSEDGKETSNTDAPENNPQYTTVYVGNLAPEVTQLDLHRHFHNLGAGAIEEVRVQRDKGFGFVRYSTHAEAAMAIQMGNAQSFLLGKQIKCSWGSKPTPPGTASNPLPPPAAAAAPMPGFSASDLLAYERQLAMSKMGGIHALMHPQGQQPLKQAALGGSQAIYDGGFQNVAAQQMMYYQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2291 417 SUPERFAMILY RNA-binding domain, RBD 247 340 IPR035979 GO:0003676
Prci12g2291 417 Gene3D - 1 134 IPR012677 -
Prci12g2291 417 SUPERFAMILY RNA-binding domain, RBD 131 219 IPR035979 GO:0003676
Prci12g2291 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 258 333 IPR000504 GO:0003723
Prci12g2291 417 MobiDBLite consensus disorder prediction 218 257 - -
Prci12g2291 417 SMART rrm1_1 259 329 IPR000504 GO:0003723
Prci12g2291 417 SMART rrm1_1 138 211 IPR000504 GO:0003723
Prci12g2291 417 SMART rrm1_1 53 122 IPR000504 GO:0003723
Prci12g2291 417 FunFam oligouridylate-binding protein 1-like isoform X2 135 230 - -
Prci12g2291 417 Gene3D - 135 236 IPR012677 -
Prci12g2291 417 FunFam oligouridylate-binding protein 1B-like isoform X2 1 134 - -
Prci12g2291 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 126 IPR000504 GO:0003723
Prci12g2291 417 SUPERFAMILY RNA-binding domain, RBD 36 130 IPR035979 GO:0003676
Prci12g2291 417 Gene3D - 237 337 IPR012677 -
Prci12g2291 417 FunFam Oligouridylate-binding protein 1C 235 337 - -
Prci12g2291 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 209 IPR000504 GO:0003723
Prci12g2291 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 120 IPR000504 GO:0003723
Prci12g2291 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 260 321 IPR000504 GO:0003723
Prci12g2291 417 MobiDBLite consensus disorder prediction 216 257 - -
Prci12g2291 417 CDD RRM1_PUB1 54 124 - -
Prci12g2291 417 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 50 336 - -
Prci12g2291 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 215 IPR000504 GO:0003723
Prci12g2291 417 CDD RRM2_PUB1 136 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2291 Prci-Chr12 40713002 40720151 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2291 47 334 Eukaryotic Initiation Factors Gene Family AT4G34110 29.373 3.42e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2291 K13201 - cit:102616329 734.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci12g2291 12 40713002 40720151 Prci12g2291 12 40713002 40720151 ECH