Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2290 ATGCAGAATCCCAGGCTGAAGCAGCAGCAAGCTCTTATGCAACAAGCTCTTATGCAACAACAGTCTCTCTACCACCCTGGCCTCTTAGCTGCTCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTTCTTGCCGCAGTGTGTATGTGGGGAACATTCATCCACAGGTAACAGAGTCGCTGCTTCAGGAACTTTTTGCAAGTAATGGTCCAGTTGAAGGTTGTAAACTTATTAGAAAAGAGAAGTCATCCTATGGATTTGTTCACTATTTTGATCGTAGATCAGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCACTTGTTTGGTCAGCCGATCAAAGTTAACTGGGCATATGCTAGCGGGCAGAGAGAGGATACATCAGGTCATTACAACATATTTGTTGGTGATCTTAGTCCTGAGGTTACTGATGCTACATTGTTTGCTTGCTTTTCCGTCTACCCCAGTTGCTCAGATGCAAGGGTTATGTGGGATCAGAAAACTGGACGATCAAGAGGGTTTGGATTTGTTTCATTCCGTAATCAACAGGATGCACAAGGCGCTATAAATGATTTAACTGGTAAATGGCTTGGTAGTAGACAAATACGCTGCAACTGGGCAGCAAAAGGTGCTGGTTCTAGTGAGGATAAACAAAGTTCAGATGCTAAAAGTGTCGTTGAACTCACAAATGGCTCATCTGATGGTAAAGAGACAAGTAACACTGATGCCCCAGAGAATAATCCTCAATATACTACTGTCTATGTGGGAAATCTTGCACCAGAGGTAACCCAGCTTGATCTCCATCGCCACTTTCATAATCTTGGGGCTGGTGCGATAGAGGAGGTTCGAGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCAATGGCTATTCAGATGGGGAATGCCCAGTCTTTTCTCCTGGGTAAACAAATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCTCCTGGAACTGCTTCAAATCCTCTTCCACCACCTGCTGCTGCTGCTGCACCTATGCCTGGCTTCTCTGCTTCTGATCTTCTGGCCTATGAGCGTCAGCTAGCAATGAGCAAGATGGGTGGTATCCATGCCCTGATGCATCCCCAAGGGCAGCAACCTCTTAAACAGGCAGCACTCGGAGGAAGTCAGGCAATTTATGATGGGGGGTTCCAGAATGTTGCTGCACAACAAATGATGTACTACCAGTGA 1251 0.4628 MQNPRLKQQQALMQQALMQQQSLYHPGLLAAPQIEPIPSGNLPPGFDPSSCRSVYVGNIHPQVTESLLQELFASNGPVEGCKLIRKEKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQGAINDLTGKWLGSRQIRCNWAAKGAGSSEDKQSSDAKSVVELTNGSSDGKETSNTDAPENNPQYTTVYVGNLAPEVTQLDLHRHFHNLGAGAIEEVRVQRDKGFGFVRYSTHAEAAMAIQMGNAQSFLLGKQIKCSWGSKPTPPGTASNPLPPPAAAAAPMPGFSASDLLAYERQLAMSKMGGIHALMHPQGQQPLKQAALGGSQAIYDGGFQNVAAQQMMYYQ 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2290 416 Gene3D - 237 336 IPR012677 -
Prci12g2290 416 Gene3D - 135 236 IPR012677 -
Prci12g2290 416 FunFam oligouridylate-binding protein 1-like isoform X2 135 230 - -
Prci12g2290 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 259 320 IPR000504 GO:0003723
Prci12g2290 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 120 IPR000504 GO:0003723
Prci12g2290 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 209 IPR000504 GO:0003723
Prci12g2290 416 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 50 335 - -
Prci12g2290 416 MobiDBLite consensus disorder prediction 216 256 - -
Prci12g2290 416 SUPERFAMILY RNA-binding domain, RBD 49 213 IPR035979 GO:0003676
Prci12g2290 416 FunFam oligouridylate-binding protein 1B-like isoform X2 1 134 - -
Prci12g2290 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 126 IPR000504 GO:0003723
Prci12g2290 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 332 IPR000504 GO:0003723
Prci12g2290 416 SUPERFAMILY RNA-binding domain, RBD 246 339 IPR035979 GO:0003676
Prci12g2290 416 CDD RRM1_PUB1 54 124 - -
Prci12g2290 416 SMART rrm1_1 258 328 IPR000504 GO:0003723
Prci12g2290 416 SMART rrm1_1 138 211 IPR000504 GO:0003723
Prci12g2290 416 SMART rrm1_1 53 122 IPR000504 GO:0003723
Prci12g2290 416 Gene3D - 1 134 IPR012677 -
Prci12g2290 416 MobiDBLite consensus disorder prediction 218 256 - -
Prci12g2290 416 FunFam Oligouridylate-binding protein 1C 235 336 - -
Prci12g2290 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 215 IPR000504 GO:0003723
Prci12g2290 416 CDD RRM2_PUB1 136 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2290 Prci-Chr12 40713000 40720151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2290 47 333 Eukaryotic Initiation Factors Gene Family AT4G34110 28.808 6.19e-23 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2290 K13201 - gmx:100814415 734.947