Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2271 ATGCCCTTCAAAGCCTTCCTGTTTGGCTGTTTAAAGGCCAAGAATAAGGACCCATCCTCTGATCCAGCTCCAGTCACCAGAAAGACACCTTCAAGGAGACTATCCCTCTCTGATTTGAGCAATGTTTCTTCAATCTCTATCATAAGTGATCTATCCAACTCTGTTCTCGGATCAAATCTTCATGCTTTCACTTTCAAAGAGCTCCAAGAGATCACTAACAACTTCAGCAGAAGCAGCGTTCTTGGAGAAGGTGGGTTCGGCAAGGTGTATAAAGGCTTCATTGATGACAAGCTTAGGCCTGGATTAAAACCTCAAGTTGTGGCAGTTAAGGTGTTAGACTTGGACGGGAAACAAGGCCATAGAGAGTGGTTGGCTGAAGTAATATTTCTGGGGCAATTGAAGCATCCCAATCTGGTGAACCTAATTGGGTATTGCTGCAAAGACGAGAACAGGCTACTGGTATACGAATACATGGAAAGAGGCAATTTAGAGGACAAGCTTTTTAAAGGCTATTCAGCGGCCTTGCCATGGTTAACAAGAATCAAAATCGCAATTGGAGCAGCAAAAGGTCTTGCTTTTCTTCACGAAGAAGAGAAACCGGTTATATACAGAGATGTTAAAGCCTCAAACATACTATTAGATGCCGGCTACAATGCTAAGCTGTCTGATTTTGGGCTAGCGATAGATGGTCCAGAGGAAGATCAGAGCCATATCACAACTCGAGTTATGGGTACCCACGGCTATGCTGCTCCGGAGTATATCATGACAGGACATTTGACAACCATGAGCGATGTATACAGCTATGGGGTGGTTCTCTTAGAGCTACTTACAGGAAAGAGATCAGTGGACGGTAATCGACCTTCGAGAGAGCAGGATTTGGTAGTATGGGCCAGACCTCTTCTGAAAGATGCCCAGAAACTTCAAAGAATAATGGATCCAAGACTGGAGGGTCAATACTCCATTGAAGGAGCTAGGAAGGTGGCTGCTTTGGTTCACCAATGTCTGAGTCATCAGGCCAAGACTCGACCATCAATGCGCACAGTGGTCAAGTCACTAGAGCCTATAATGAACCTCGCTGACATTCCACCAGGCCATTTTGTCTATGTCGTTCCAAATGAGAGTGAAATTGAAGGTTGGGTACCAATTGATATTGAAAAACGAGTAGAGGATGAGAACAAGGAGAAGAAGGCGGGGACGCAGAAGGGCCGGCCAAGGAATCGGAAAAATCGAAGACGTAAACGACAGATTAAGCCACTGAAGTCTCGTGCCGTTTACACCGATACGACGTTGTATAAAACTCTTGGTACTAGTTTGTACTTTGTACACTCAAATTAG 1335 0.4479 MPFKAFLFGCLKAKNKDPSSDPAPVTRKTPSRRLSLSDLSNVSSISIISDLSNSVLGSNLHAFTFKELQEITNNFSRSSVLGEGGFGKVYKGFIDDKLRPGLKPQVVAVKVLDLDGKQGHREWLAEVIFLGQLKHPNLVNLIGYCCKDENRLLVYEYMERGNLEDKLFKGYSAALPWLTRIKIAIGAAKGLAFLHEEEKPVIYRDVKASNILLDAGYNAKLSDFGLAIDGPEEDQSHITTRVMGTHGYAAPEYIMTGHLTTMSDVYSYGVVLLELLTGKRSVDGNRPSREQDLVVWARPLLKDAQKLQRIMDPRLEGQYSIEGARKVAALVHQCLSHQAKTRPSMRTVVKSLEPIMNLADIPPGHFVYVVPNESEIEGWVPIDIEKRVEDENKEKKAGTQKGRPRNRKNRRRKRQIKPLKSRAVYTDTTLYKTLGTSLYFVHSN 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2271 444 SMART serkin_6 75 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci12g2271 444 Gene3D Transferase(Phosphotransferase) domain 1 158 361 - -
Prci12g2271 444 Gene3D Phosphorylase Kinase; domain 1 38 157 - -
Prci12g2271 444 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 158 361 - -
Prci12g2271 444 CDD STKc_IRAK 81 355 - -
Prci12g2271 444 ProSiteProfiles Protein kinase domain profile. 75 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci12g2271 444 MobiDBLite consensus disorder prediction 400 419 - -
Prci12g2271 444 MobiDBLite consensus disorder prediction 390 419 - -
Prci12g2271 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Prci12g2271 444 FunFam Serine/threonine-protein kinase BIK1 42 157 - -
Prci12g2271 444 PANTHER OS01G0588500 PROTEIN-RELATED 36 355 - -
Prci12g2271 444 SUPERFAMILY Protein kinase-like (PK-like) 51 353 IPR011009 -
Prci12g2271 444 ProSitePatterns Protein kinases ATP-binding region signature. 81 110 IPR017441 GO:0005524
Prci12g2271 444 Pfam Protein tyrosine and serine/threonine kinase 78 352 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2271 Prci-Chr12 40421044 40423142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2271 61 352 Glycoside Hydrolase AT3G07070 51.864 2.71e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Prci12g2271 PK_Tyr_Ser-Thr 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2271 - - gmx:100790454 598.971