Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2263 ATGGCTTCTAGGAGTGATGATAACAAGAGAAAAGTGAAGTCAAATGAAGCCATGAAGAACGTAGGTGTGAGCAAGGGAGCTTGGACGCCAGAAGAAGACAGGAAACTAGCTGAGGTTATTGCAGTTCATGGGGCCAAGAAGTGGAAATCCATCGCCGCCAAAGCAGGCCTTAACCGGGGTGGTAAGAGTTGCAGGCTGAGATGGTTGAACTATCTTAGGCCTAATATCAAGAGAGGAAACATATCAGAACAAGAAGAGGATTTGATACTTCGACTTCATAAACTCCTCGGAAACAGATGGTCTTTAATTGCGGGAAGGCTTCCGGGAAGAACGGACAACGAGATAAAGAACTACTGGAATTCTCACTTGTGCAAGAAGATAAAGCAGAGGGAGCAGCAATCAACAAGACAAGAGAAACAAAGACTAGTACTGTTGGAGGGGGCAAATATTCCTGAAGAGAATTCTACAGAGCAAGCTGATGAAGAGGCATCAAAGGAACCCAATTTTGACAATGTGAATAGGTTCTTTGACTTGTCCATCGAAGAAGGTCAAGTGAATCTGGAGTGGGTTAATCAATTCCTTGAATTAGATGAGGCTACACTTGGACTCTTCTCACAATAA 621 0.4364 MASRSDDNKRKVKSNEAMKNVGVSKGAWTPEEDRKLAEVIAVHGAKKWKSIAAKAGLNRGGKSCRLRWLNYLRPNIKRGNISEQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKIKQREQQSTRQEKQRLVLLEGANIPEENSTEQADEEASKEPNFDNVNRFFDLSIEEGQVNLEWVNQFLELDEATLGLFSQ 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2263 206 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 127 IPR017930 -
Prci12g2263 206 FunFam Transcription factor TT2 81 146 - -
Prci12g2263 206 SMART sant 77 125 IPR001005 -
Prci12g2263 206 SMART sant 24 74 IPR001005 -
Prci12g2263 206 SUPERFAMILY Homeodomain-like 22 119 IPR009057 -
Prci12g2263 206 Gene3D - 81 144 - -
Prci12g2263 206 CDD SANT 27 72 IPR001005 -
Prci12g2263 206 Gene3D - 25 77 - -
Prci12g2263 206 MobiDBLite consensus disorder prediction 1 26 - -
Prci12g2263 206 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Prci12g2263 206 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Prci12g2263 206 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 72 IPR017930 -
Prci12g2263 206 MobiDBLite consensus disorder prediction 1 16 - -
Prci12g2263 206 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 18 158 - -
Prci12g2263 206 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Prci12g2263 206 Pfam Myb-like DNA-binding domain 78 123 IPR001005 -
Prci12g2263 206 FunFam MYB-related transcription factor 24 77 - -
Prci12g2263 206 CDD SANT 82 123 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2263 Prci-Chr12 40297793 40299178 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2263 23 134 MYB Transcription Factor Family AT5G52600 66.071 4.80e-52 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci12g2263 Myb_DNA-binding 1.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2263 K09422 - qsa:O6P43_018373 266.544