Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2262 ATGGGAAGGAGTCCTTGCTGTGCTAAGGAAGGTTTGAATAGAGGAGCATGGACAGCTGCTGAAGACAAGATTCTCATCGACTACATCAAGATTCATGGTGAAGGAAAATGGCGACACCTTCCCAAAAGAGCAGGTCTCAAGAGATGTGGGAAGAGTTGTAGGCTGAGATGGTTAAATTATCTACGACCTGATGTCAAAAGAGGAAATATAACTCATGACGAAGAGGATCTCATCATCAGGCTTCACAATCTTCTTGGAAATAGGTGGTCTTTGATAGCTGGACGACTACCAGGACGAACAGACAATGAAATAAAGAATTACTGGAACACCAACATCGTAAAGAAGCTTCAAAGTGGAAACTCAAAATCCCTCACCACTTCAAGTGGTGTTGAACCAAGTTCCTCATGTTTAGCCGGTCAAGACACCGACCCGGATCCAGAGCTTCCAAATAAAGGTCCATGCTTGATTCGAACCAAAGCAACAAGGTGCACCAAGGTGACACTCAGCGAAGAACTCCGACCATTAATGGCCGCAGCTTCTTCGAATCGTGATGGCATGAATGTTACCTGCGATCATGCGAAAATGCAGGCACCGCCTTTGGTGGATTCGGAGGGAATTACAAACAACCTGTTGGATTTCATGGCGGATTTTGAGATCGAAGAGACTATGTTTTCAGATCTTCTTCGGAATATGGATATTTCAGAACCATCTTGTTTTGAGAATAAAGTCGTTGCAGTGGAAGTAGACACTCACGCCGATCCTCAATGTTGTCATCGTTTGTCTCCTCTGATTTCGGATGAAACCTGCTTGAATGTTTCCGATTATTCAATGTTGCATGGCTCTGAGGATTTCCAATCAATGTCGGCTCTAATGGAGAATGAATTTGACTGGCTTTGA 897 0.4404 MGRSPCCAKEGLNRGAWTAAEDKILIDYIKIHGEGKWRHLPKRAGLKRCGKSCRLRWLNYLRPDVKRGNITHDEEDLIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNIVKKLQSGNSKSLTTSSGVEPSSSCLAGQDTDPDPELPNKGPCLIRTKATRCTKVTLSEELRPLMAAASSNRDGMNVTCDHAKMQAPPLVDSEGITNNLLDFMADFEIEETMFSDLLRNMDISEPSCFENKVVAVEVDTHADPQCCHRLSPLISDETCLNVSDYSMLHGSEDFQSMSALMENEFDWL 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2262 298 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 139 - -
Prci12g2262 298 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Prci12g2262 298 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci12g2262 298 CDD SANT 16 61 IPR001005 -
Prci12g2262 298 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci12g2262 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Prci12g2262 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Prci12g2262 298 MobiDBLite consensus disorder prediction 119 152 - -
Prci12g2262 298 FunFam MYB-related transcription factor 13 66 - -
Prci12g2262 298 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci12g2262 298 SMART sant 66 114 IPR001005 -
Prci12g2262 298 SMART sant 13 63 IPR001005 -
Prci12g2262 298 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Prci12g2262 298 CDD SANT 71 112 IPR001005 -
Prci12g2262 298 Gene3D - 70 133 - -
Prci12g2262 298 Gene3D - 14 66 - -
Prci12g2262 298 MobiDBLite consensus disorder prediction 119 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2262 Prci-Chr12 40275337 40276874 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2262 1 173 MYB Transcription Factor Family AT1G35515 54.545 1.17e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci12g2262 Myb_DNA-binding 8.8e-15 CL0123