Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2261 ATGGCTTCTGAGACTGAAGGTTTTGCAAAGAGGAAAGTGAAGGCAGCTGGATCATCCAAGTCAAACGTCACTCTTAGCAAAGCAGCTTGGACATCTGAAGAGGATAGGAAACTAGCCGAGGTTACTGCAATTCATGGGGCAAAAAGGTGGAAGTCCATTGCAGTCAAAGCAGGTCTCAATCGTTGCGGTAAGAGTTGTAGGTTAAGGTGGATGAACTATCTCAGACCCAATATCAAACGGGGAAACATATCAGACGAAGAAGAGGATTTGATAATTCGGCTTCACAAACTCCTTGGAAATAGGTGGGCTTTGATCGCCGGGAGACTTCCTGGTCGAACAGATAACGAGATTAAGAACTATTGGAATTCTCATTTGAGCAAGAAGATAAAGCAGATGGAGAAGCACTCAAGTGAGAGGTCAACCAGATATGAGAACCAAAAGGTGGTGGATGATCACAAGATTCCTGAAGAAGCTGAGCCAATGAGAGAAAAGATTTCCCCTGAGGAAGCTAATGAAGAGTCATCATCAAAACCCAAATTTGATGCAGATGGGGTCTTCAATTTCTCCGAAGAAGGTCTCTCGAATCTGGAATGGGTTAGCCAATTTCTTGAACTCGATGAAACAACCACGGGACTCTTCTCACAATACTAA 651 0.4378 MASETEGFAKRKVKAAGSSKSNVTLSKAAWTSEEDRKLAEVTAIHGAKRWKSIAVKAGLNRCGKSCRLRWMNYLRPNIKRGNISDEEEDLIIRLHKLLGNRWALIAGRLPGRTDNEIKNYWNSHLSKKIKQMEKHSSERSTRYENQKVVDDHKIPEEAEPMREKISPEEANEESSSKPKFDADGVFNFSEEGLSNLEWVSQFLELDETTTGLFSQY 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2261 216 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Prci12g2261 216 SMART sant 26 76 IPR001005 -
Prci12g2261 216 SMART sant 79 127 IPR001005 -
Prci12g2261 216 FunFam MYB-related transcription factor 26 79 - -
Prci12g2261 216 Gene3D - 28 79 - -
Prci12g2261 216 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 19 168 - -
Prci12g2261 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Prci12g2261 216 FunFam Transcription factor TT2 83 153 - -
Prci12g2261 216 CDD SANT 84 125 IPR001005 -
Prci12g2261 216 MobiDBLite consensus disorder prediction 1 26 - -
Prci12g2261 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Prci12g2261 216 MobiDBLite consensus disorder prediction 131 181 - -
Prci12g2261 216 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Prci12g2261 216 Gene3D - 83 154 - -
Prci12g2261 216 Pfam Myb-like DNA-binding domain 29 74 IPR001005 -
Prci12g2261 216 Pfam Myb-like DNA-binding domain 80 125 IPR001005 -
Prci12g2261 216 SUPERFAMILY Homeodomain-like 26 121 IPR009057 -
Prci12g2261 216 CDD SANT 29 74 IPR001005 -
Prci12g2261 216 MobiDBLite consensus disorder prediction 131 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2261 Prci-Chr12 40243951 40246036 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2261 27 129 MYB Transcription Factor Family AT5G40330 68.932 1.02e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci12g2261 Myb_DNA-binding 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2261 K09422 - qsu:112020715 252.292