Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2258 ATGGGAAGGAATCCTTGCAATCCCAAGGATAGTTTGAACAGAGGAGCGTGGACAGCCATAGAAGACCAGATTCTTACCGACTACATTAAGAATCATGGCCAAGGAAAATGGAGACTCCTTCCCAAAAGAGCAGGACTAAATAGATGCGGCAAGAGTTGTAGGCTGAGATGGTTAAATTATTTGAGACCTGATATCAAAAGGGGAAATATTACTCCAGATGAAGAAGATCTCATTATCAAGCTTCACAATCTTCTTGGAAACAGGTGGTCTTTGATAGCTGGACGACTACCAGGTCGAACCGATAATGAAATAAAGAATTACTGGAATTCCCACGTCGCAAAGAAACTTCAAAAAGAAAAATTGAAGTCTGCCACTACAAGTAGCTCCAAAATCTTAGCCGCACAAGACTCAGACAACAAAGTCTCACCAAGTAATTCACGTGTGATTCGAACCAAAGCGACAAGGTGCACCAAGGTAATACTAAGCAAACAAGTCCAAAAATTAATGGCTGCACCTTCTTTGATGATGACTCATGACATGAGCGTCGACGTTAGATGTGATCATGAGGAAAAAATGGAGGCACCGTCTTTCGTTAACGTTGATTTGGAGGGAAACACAGACAAACCATTAGATTGCAAGGCCGATTTTGAAATGAACGATGGCTTCTTTTCGGCTCTTCTGAATATGGATCTATCCGAACCATCTTGTTTGAAGAATAAAGTGGAGGAAGACAGCAATGCCAGCACAAGTGATAAAGGTGGTTGTCCTCATTTGTCTCCTGCACCGACACTTGATGGTACCTTCTTGAATGTTTCCCATGGTTCCTTGCATGGCTTTGAGGATTTTCATTCAATGTCAGGTTTAATGGAGAATGAATTTCATTGGCTTTGA 891 0.4164 MGRNPCNPKDSLNRGAWTAIEDQILTDYIKNHGQGKWRLLPKRAGLNRCGKSCRLRWLNYLRPDIKRGNITPDEEDLIIKLHNLLGNRWSLIAGRLPGRTDNEIKNYWNSHVAKKLQKEKLKSATTSSSKILAAQDSDNKVSPSNSRVIRTKATRCTKVILSKQVQKLMAAPSLMMTHDMSVDVRCDHEEKMEAPSFVNVDLEGNTDKPLDCKADFEMNDGFFSALLNMDLSEPSCLKNKVEEDSNASTSDKGGCPHLSPAPTLDGTFLNVSHGSLHGFEDFHSMSGLMENEFHWL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2258 296 SMART sant 66 114 IPR001005 -
Prci12g2258 296 SMART sant 13 63 IPR001005 -
Prci12g2258 296 CDD SANT 16 61 IPR001005 -
Prci12g2258 296 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci12g2258 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Prci12g2258 296 FunFam MYB-related transcription factor 13 66 - -
Prci12g2258 296 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Prci12g2258 296 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci12g2258 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Prci12g2258 296 Gene3D - 71 141 - -
Prci12g2258 296 Gene3D - 14 66 - -
Prci12g2258 296 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci12g2258 296 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Prci12g2258 296 CDD SANT 71 112 IPR001005 -
Prci12g2258 296 MobiDBLite consensus disorder prediction 127 146 - -
Prci12g2258 296 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2258 Prci-Chr12 40233618 40235189 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2258 1 148 MYB Transcription Factor Family AT4G09460 60.510 8.27e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci12g2258 Myb_DNA-binding 3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2258 K09422 - qsa:O6P43_027567 284.263