Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2256 ATGGGAAGGAGTCCTTGCTGCGCTAAGGAAGGCTTGAATAGAGGAGCATGGACAGCTATAGAAGACAAGGTTCTCATCGACTACATTAAGATTCATGGCGAAGGAAAATGGAGAGACCTTCCCAAAAGAGCAGGTCTTAAGAGATGTGGGAAGAGTTGTAGGCTGAGATGGTTAAATTATCTGAGGCCTGATATCAAAAGAGGAAATATTACTCGCGACGAAGAGGATCTCATTATCAGACTTCACAAACTTCTTGGAAACAGGTGGTCTTTAATAGCTGGACGACTGCCAGGACGAACAGACAATGAAATAAAGAATTATTGGAACACAAACATCGGAAAGAAGATTCAAAATGGAAGCTCAAAAACAAAATCGTCCCCTACTACTTCAAGAGGTGATTTACGTAGCTCGCCAAGCCTAGCCATACATGACAAGGGCACAGACTTGGACTCGGACCCAAAAGCCCCACAAAAAACCAAGACCGGTCAATTCGTGGTTCGAACAAAAGCAACAAGGTGCACCAAAGTGATAGTGAGCAAACAAGTCCAACCATTCATGGCCGCACCACCTTGTTTGACCAGTACTCGCGATGATGAGGACGTGAACGTTAGGTGTGAGCGTGAGAAAATAATGGAAGCAGCATTACCATCTTTTGTGGATTCGGAGGGAAATAATACAGACAACTCGTTAGATTTCATGGCGAATTTTGAGATGGACGAGGGCTTCTTTTCGGATCTTCTGAATATGGATATATCCGAACCGTCTTGTTTAATTGAGAATAATAAAGTGGGAGTGCAAGAAGACATCAGTAACGCCAGCACCAGTGAACAAGGTTGTCATCAATATTTGTCTTCTCCATTATCTAATGACACCCACTTGAATAATGTTTCTGATGATTCGCTGCATGAGTCTGAGGATTTTCAATCGATGTCAGCTTTAATGGAGAATGAATTTGATTGGCTTTGA 966 0.4265 MGRSPCCAKEGLNRGAWTAIEDKVLIDYIKIHGEGKWRDLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNITRDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGKKIQNGSSKTKSSPTTSRGDLRSSPSLAIHDKGTDLDSDPKAPQKTKTGQFVVRTKATRCTKVIVSKQVQPFMAAPPCLTSTRDDEDVNVRCEREKIMEAALPSFVDSEGNNTDNSLDFMANFEMDEGFFSDLLNMDISEPSCLIENNKVGVQEDISNASTSEQGCHQYLSSPLSNDTHLNNVSDDSLHESEDFQSMSALMENEFDWL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2256 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Prci12g2256 321 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Prci12g2256 321 Gene3D - 14 66 - -
Prci12g2256 321 CDD SANT 16 61 IPR001005 -
Prci12g2256 321 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci12g2256 321 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci12g2256 321 Gene3D - 70 136 - -
Prci12g2256 321 SMART sant 13 63 IPR001005 -
Prci12g2256 321 SMART sant 66 114 IPR001005 -
Prci12g2256 321 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 193 - -
Prci12g2256 321 CDD SANT 71 112 IPR001005 -
Prci12g2256 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Prci12g2256 321 FunFam MYB-related transcription factor 13 66 - -
Prci12g2256 321 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci12g2256 321 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Prci12g2256 321 MobiDBLite consensus disorder prediction 115 136 - -
Prci12g2256 321 FunFam Transcription factor TT2 70 138 - -
Prci12g2256 321 MobiDBLite consensus disorder prediction 115 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2256 Prci-Chr12 40203092 40205017 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2256 1 190 MYB Transcription Factor Family AT2G16720 49.510 3.77e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci12g2256 Myb_DNA-binding 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2256 K09422 - qsu:112003598 305.064