Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2254 ATGGCGAAGGAAAATGGAGACTCGTTCCCAGAAGAGCAGGTCAGATGTCTTAAGAGATGTGGCAAAAGTTGCAGGCTGAGATGGTTAAATTATCTGAAACCTGATATCAAAAGAGGAAATATCACTCCTGACGAAGAGGATTTCATTATCAGACTTCATAAGCTTCTTGGAAACAGGTGGTCTTTGATAGCTGGGCGATTGCCGGGACGAACGGACAATGAGATAAAGAATTATTGGAACGCCCACATCAGAAAGAAGCTTCTAAACGCAAAACCAGAATCCTCAATCCCTTCAAATTCTGGTTCATGCGTGATTCGAACCAAAGCAACGAAGTGCACCAAGGTACTAACGTGCGAACAAGTCCAGCCGTTAATGGGAATGGCTGCACCTTCTTCTTCGCCTCATGACATGACCGTTAGGTGTGAACGTGAGAAAATAATGGAGGCTCCACCTTCTGTGGATGCAGAGGCAAATACTAATCACTATCCGTTAGATTTCATGGCGGATTTTGAACTGGATGATCGTTTTGTTTCGAATTTTCTGAACATGGATGCATCCGAACCGTCTTGTTTTGTGGGGAATAACAAAATTTTGGAAGACAGCAACGCCGGCCCTGCTTGCGACCAAGGTTTTCAGATGAATAATGTTTCCTATGACTTCTTGCTTGACACCGAGGATTTCCAATCAACGCCGTCAGCTTTAAAGGAGAATGATGATCTAAAGTTTGATTGGCCTTCTGGAAACTTTTGA 750 0.436 MAKENGDSFPEEQVRCLKRCGKSCRLRWLNYLKPDIKRGNITPDEEDFIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNAHIRKKLLNAKPESSIPSNSGSCVIRTKATKCTKVLTCEQVQPLMGMAAPSSSPHDMTVRCEREKIMEAPPSVDAEANTNHYPLDFMADFELDDRFVSNFLNMDASEPSCFVGNNKILEDSNAGPACDQGFQMNNVSYDFLLDTEDFQSTPSALKENDDLKFDWPSGNF 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2254 249 CDD SANT 42 83 IPR001005 -
Prci12g2254 249 SUPERFAMILY Homeodomain-like 18 88 IPR009057 -
Prci12g2254 249 Gene3D - 42 111 - -
Prci12g2254 249 Pfam Myb-like DNA-binding domain 38 80 IPR001005 -
Prci12g2254 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 87 IPR017930 -
Prci12g2254 249 SMART sant 37 85 IPR001005 -
Prci12g2254 249 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 16 128 - -
Prci12g2254 249 Gene3D - 7 37 - -
Prci12g2254 249 ProSiteProfiles Myb-like domain profile. 33 83 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2254 Prci-Chr12 40103307 40104854 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2254 13 198 MYB Transcription Factor Family AT5G35550 44.279 7.54e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci12g2254 Myb_DNA-binding 1.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2254 K09422 - qsa:O6P43_018371 188.348