Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2253 ATGAGAACGAGTGCTTGCAATACCAGGGAAGGTTTGAACAGAGGAGCATGGACAGCAGTAGAAGACCAGATTCTCATCGATTACATTGAAACTCATGGCGAAGGAAAATGGAGACTCGTTCCCAGAAGAGCAGGTCTTAAGAGATGTGGCAAAAGTTGCAGGCTGAGATGGTTAAATTATCTGAAACCTGATATCAAAAGAGGAAATATCACTCCTGACGAAGAGGATTTCATTATCAGACTTCATAAGCTTCTTGGAAACAGGTGGTCTTTGATAGCTGGGCGATTGCCGGGACGAACGGACAATGAGATAAAGAATTATTGGAACGCCCACATCAGAAAGAAGCTTCTAAACGCAAAACCAGAATCCTCAATCCCTTCAAATTCTGGTTCATGCGTGATTCGAACCAAAGCAACGAAGTGCACCAAGGTACTAACGTGCGAACAAGTCCAGCCGTTAATGGGAATGGCTGCACCTTCTTCTTCGCCTCATGACATGACCGTTAGGTGTGAACGTGAGAAAATAATGGAGGCTCCACCTTCTGTGGATGCAGAGGCAAATACTAATCACTATCCGTTAGATTTCATGGCGGATTTTGAACTGGATGATCGTTTTGTTTCGAATTTTCTGAACATGGATGCATCCGAACCGTCTTGTTTTGTGGGGAATAACAAAATTTTGGAAGACAGCAACGCCGGCCCTGCTTGCGACCAAGGTTTTCAGATGAATAATGTTTCCTATGACTTCTTGCTTGACACCGAGGATTTCCAATCAACGCCGTCAGCTTTAAAGGAGAATGATGATCTAAAGTTTGATTGGCCTTCTGGAAACTTTTGA 837 0.4373 MRTSACNTREGLNRGAWTAVEDQILIDYIETHGEGKWRLVPRRAGLKRCGKSCRLRWLNYLKPDIKRGNITPDEEDFIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNAHIRKKLLNAKPESSIPSNSGSCVIRTKATKCTKVLTCEQVQPLMGMAAPSSSPHDMTVRCEREKIMEAPPSVDAEANTNHYPLDFMADFELDDRFVSNFLNMDASEPSCFVGNNKILEDSNAGPACDQGFQMNNVSYDFLLDTEDFQSTPSALKENDDLKFDWPSGNF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2253 278 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Prci12g2253 278 CDD SANT 16 61 IPR001005 -
Prci12g2253 278 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci12g2253 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Prci12g2253 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Prci12g2253 278 Gene3D - 71 140 - -
Prci12g2253 278 SMART sant 13 63 IPR001005 -
Prci12g2253 278 SMART sant 66 114 IPR001005 -
Prci12g2253 278 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci12g2253 278 FunFam MYB-related transcription factor 13 66 - -
Prci12g2253 278 Gene3D - 14 66 - -
Prci12g2253 278 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 149 - -
Prci12g2253 278 CDD SANT 71 112 IPR001005 -
Prci12g2253 278 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci12g2253 278 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2253 Prci-Chr12 40103293 40104854 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2253 2 211 MYB Transcription Factor Family AT3G13540 49.533 8.10e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci12g2253 Myb_DNA-binding 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2253 K09422 - qsa:O6P43_018371 253.062