Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2252 ATGGGAAGGAGTATTTGCAGTGCAAAGGAAGGTTTGAATAGAGGAGCATGGACAGCTACAGAAGACCAGATTCTCATTGACGACATTCAGGTTCATGGCCAAGGAAACTGGGGACTCCTTCCCAAACGAGCAGGTCTTAAGAGAACTGGGAAGAGTTGTAGGCTGAGATGGTTAAATTATCTGAGACCAGGTATTAAAAGAGGAAATATCACCCATGATGAAGAGGATCTCATTATCAGACTTCACAAGCTTCTTGGAAACAGGTGGTCTTTGATAGCTGGACGTCTCCCAGGACGAACTGATAATGAAATAAAGAATTATTGGAACACCCACATAAAAAAAAAGCTTCAAAATGGAAACTCAAATTTTTCTACTTCTTCAAGTGGTGTTTCACTTAGGCCATCAACCTTAGCCAGACAAGGCTCAGACTCAGAGCCAGACCCAAAATCCTCACCAAACACTGGTCCATGCGTGGTTCAAACCAGAGCAACAAGGTGCAACAAGGTAATATTGAGCCAACAAGTCCAACCATTGATTAATGCACAACCTTTTTTGACCCATGACACGAACGTTAGATGTGGTTATGAGAAAATAATGGTGTCAACACCTTTTGTTGATACGGCGGGAAATGCAAACAATTGGTTAGATTTCATGGCGGATTTTGACATGGACGAGAGCTTCTTTTCGAATCTTTTGAAAATGGATATATCAGAATCATCTTATCTTGGGAAAAATGACCAAGATTGTCATCCCTTGAATGTTTCCGATGATTCCAATCATGGGTCTGAGGATTTGCAGTCCATGTCTGCTTTGAATGGAGAATGA 825 0.4145 MGRSICSAKEGLNRGAWTATEDQILIDDIQVHGQGNWGLLPKRAGLKRTGKSCRLRWLNYLRPGIKRGNITHDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTHIKKKLQNGNSNFSTSSSGVSLRPSTLARQGSDSEPDPKSSPNTGPCVVQTRATRCNKVILSQQVQPLINAQPFLTHDTNVRCGYEKIMVSTPFVDTAGNANNWLDFMADFDMDESFFSNLLKMDISESSYLGKNDQDCHPLNVSDDSNHGSEDLQSMSALNGE 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2252 274 MobiDBLite consensus disorder prediction 247 274 - -
Prci12g2252 274 CDD SANT 16 61 IPR001005 -
Prci12g2252 274 FunFam Transcription factor TT2 70 135 - -
Prci12g2252 274 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 142 - -
Prci12g2252 274 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci12g2252 274 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Prci12g2252 274 SMART sant 13 63 IPR001005 -
Prci12g2252 274 SMART sant 66 114 IPR001005 -
Prci12g2252 274 MobiDBLite consensus disorder prediction 118 157 - -
Prci12g2252 274 Gene3D - 14 66 - -
Prci12g2252 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Prci12g2252 274 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci12g2252 274 FunFam MYB-related transcription factor 13 66 - -
Prci12g2252 274 CDD SANT 71 112 IPR001005 -
Prci12g2252 274 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Prci12g2252 274 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci12g2252 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Prci12g2252 274 Gene3D - 70 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2252 Prci-Chr12 40079289 40080998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2252 1 116 MYB Transcription Factor Family AT2G16720 70.690 4.79e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci12g2252 Myb_DNA-binding 5.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2252 K09422 - qsa:O6P43_018371 254.603