Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2236 ATGTTGACCTGCATTGCGTGTTCGAAGCAGCTCAATGACAAGAGATCTCTTCCCCAACAAGATGAGCACGAAGAAGCCGTGGATACGCCCAGCACCAAGCAGGCCATCAAGGCCCTCACCGCACAGATCAAGGACATGGCAGTGAAGGCTTCTGGGGCATACAGAAATTGCAAGCCTTGTTCAGGATCTTCAAATGGTAACCGGAACCAGAACTATGCTGATTCTGATATGGCTTCCGAATCAGCGAGATTTCACTGGGCGTACAAAAGAGCTGGCAGTTCCAACTCAACCCCAAGACTTTGGGGGAAGGAGATGGAGGCGAGACTGAAAGGGCTCTCTAGCGGCGAAGGAACGCCGGCGTCGGTGAGTGGTCGGACTGAGTCGGTGGTATTCATGGAGGAGGATGAGCCCAAGGAATGGGTTGCTCAAGTAGAGCCTGGCGTGCTTATCACTTTTGTTTCATTGCCTCAGGGTGGTAATGATCTGAAGCGAATACGGTTCAGCCGGGAAATGTTTAATAAATGGCAAGCTCAAAGGTGGTGGGCTGAGAATTATGACAAGGTCATGGAGTTGTACAATGTTCAAAGGTTCAATGAACAAGCAGGTCCGCTGCCAACCCCGCCGAGATCTGAAGATGAGAGCTCGAAGATTGAATCTGTTAGAGACAGCCCTGTCACTCCTCCTCTTAACAAAGAGCGTCCGCCCCATCATCTCCTTCACCGTCAAATGGGAATGGGATACTCATCATCGGATTCGCTGGATCACCACACGATGCAACAGCGCCCTTGCTATGAAACAAGCGGTTTAGCTTCGACACCAAAACTCTCTGGCATCAGTGGGGCAAAGACTGAAACGTCATCCTTAGATGGTTCTGTGAGGACTAGTTCATCAAGAGAGGGAGATCAGTCTGGCGAGCTTTCACTCAGCAATGCCAGCGATATGGAGACTGAATGGGTTGAACAGGATGAACCAGGAGTATACATCACCATCAGAGCACTGCCAGGGGGAACCCGAGAGCTCAGGCGTGTACGGTTCAGCCGAGAAAGGTTCGGAGAAATGCATGCGAGGTTGTGGTGGGAGGAGAACCGTACGAGGATACAGGAGCAATATTTGTGA 1116 0.5108 MLTCIACSKQLNDKRSLPQQDEHEEAVDTPSTKQAIKALTAQIKDMAVKASGAYRNCKPCSGSSNGNRNQNYADSDMASESARFHWAYKRAGSSNSTPRLWGKEMEARLKGLSSGEGTPASVSGRTESVVFMEEDEPKEWVAQVEPGVLITFVSLPQGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFNEQAGPLPTPPRSEDESSKIESVRDSPVTPPLNKERPPHHLLHRQMGMGYSSSDSLDHHTMQQRPCYETSGLASTPKLSGISGAKTETSSLDGSVRTSSSREGDQSGELSLSNASDMETEWVEQDEPGVYITIRALPGGTRELRRVRFSRERFGEMHARLWWEENRTRIQEQYL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2236 371 MobiDBLite consensus disorder prediction 199 317 - -
Prci12g2236 371 MobiDBLite consensus disorder prediction 245 315 - -
Prci12g2236 371 ProSiteProfiles BRX domain profile. 316 371 IPR013591 -
Prci12g2236 371 Pfam Transcription factor BRX N-terminal domain 24 60 IPR027988 -
Prci12g2236 371 ProSiteProfiles BRX domain profile. 138 193 IPR013591 -
Prci12g2236 371 Pfam Transcription factor regulating root and shoot growth via Pin3 138 192 IPR013591 -
Prci12g2236 371 Pfam Transcription factor regulating root and shoot growth via Pin3 315 370 IPR013591 -
Prci12g2236 371 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 371 IPR044532 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2236 Prci-Chr12 39943638 39947850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2236 1 371 Major Intrinsic Protein MIP AT1G31880 47.545 4.39e-104 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2236 - - cave:132186704 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci12g2236 12 39943638 39947850 Prci12g2236 12 39943638 39947850 ECH