Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2229 ATGGCAACTGATACTGCTTCATCCTGTGTCTCTGATAAATTTTCCTTGAAGAAGTATGATGTTTTTATCAGCTTTAGGGGTGAAGACACTCGCAACAACTTCACAAGCCATCTTTATGAAGCATTCTGCAGAAAGCAAATAAAAGCATACATAGACTATGAACTCCCAAGAGGAGATGAGATCTCAGCAGCACTTATGCAAGCAATCGAGAATTCCTATCTATCTGTGGTGGTATTCTCAGAAAATTATGCTTCTTCAAGATGGTGCTTGGATGAACTTGCCCACATACTTCATTGCAAAAGGGTTCAAGAACATATTGTTATTCCAGTATTTTATAAAGTTGAGCCATCTCATGTACGAAATCAGACTGGCCTCTACGAGCAAGCATTAGAGAAACATGAGAGGGACCTGAAGGTCAACCTACACGAGATTCAAAAGTGGAAGCATGCTCTCAATGAAGCTGCAAACTTAGCTGGTTATGATTCTCATACATTCAGGATTGAATCTGAACTCATTCAACAGATTGTCAAAGATATACTGCAAAAATTGAATCATAAGTACCCACTTACTGATTTGAAAGGCCTTGTAGGTATTAATTACAACTATGCAAAGATTGAGTTACTATTGAGAGAGTTTCAAACCATTGGAATTTGGGGCATGGGTGGCATTGGTAAAACAACTCTTGCCAAAGCTACATTTGTCAAACACTCTCCCCATTATGAAGGTTGTTGCTTCTTGGCAAATGTAAGGGAAAATTCTGCAAAGCATGATAGTGGACTTGAGGATTTACGCTATAAACTTCTCTCCTGTCTGCTACCAGAAGAAGATCTCTTTACTGGAACTTTAACCTCTTTTCTTGAGTCTAGGGTTAGTCGTAAAAAGGTTTTCATTGTTCTTGATGCTGTTAGTACTTTAGAGCAATTAGAGTACTTGGTTGGGGAACCTCATTGCTTTAGTCTAGAAAGTAAAATTGTCATCACATCAAGGGACAAGCATGTGCTTAGCAAAGGAGTTGATGTGATATATAAGGTCAAAGAATTGAAGTTCCAAGAATCCCTTGCGCTTTTAAGCTTGAATGCCTTCAACCAAAATCTGCCTATAACAGGATATAAGGAGTTATCAGAAAAGGCAGTTGTTTATGCAAAAGGAATTCCATTAGCTTTAAAAGTTTTGGGTTCATTTCTTCATGGCAAAAGTAAAATTGAATGGAAGAGTGCATTAAGAAAACTTGTAAAGATTCCCCATGAAGATATTCAGAAGGTGTTAAGATTGAGTTATGATGGATTAAATCATGAAGAGAAGAACATATTTCTGGAGATTGCATGCTTTTTGAAGGGAATGTTGAAAGAACATGTGATTAGCCTATTGGATGGCTATGACTTCTATGGAGCTATTGGCATAAGAACACTTCATGATAAGGCTCTCATAATTGCAAATGATCACATGCCTTTAGAAATGCATGATTTGATACAGGAAATGGGTTGGGAAATTGTTCGTGAAGAATCTATCAATGAACCTGAACGACGGAGTCGATTATGGGATTGTGAAGAAGTCTATGATGTCTTGGCTAATGACAAGGGCACCGATAAAGTTGAAGGCATAATGTTAGATGTGTCTCGAATCAAAGATATACATTTAAGTGCTCGCACTTTCAAAAGGATGCCTAATATGCGATTTCTCAAATTTTTCTCTGCTTTAAACCATCACTCAAGTCATGTGTATTTACCAAAAGGTCTCAAGTTCTTTCCTAACAAAATAAAGTATCTAGAGTGGTATGGATATCCACTTAAATCTCTGCCACCAACTTTTTGTCCTGAAAATCTCGTTGAGCTTCACATGCCCAATAGCCATGTTAAAAAGCTTTGGAATGGAGTGCAGGATCTTGTGAACTTAAAAGAGATAAACCTTAACGGATGCAAACAATTGAAGGAGCTGCCAAATTTCTCTAAAGCCTCAAGTCTTAAGGTAGTATCTCTTGTTGATTGTGAGAGTTTGCATTACGTTCATTCTTCTATTTTGTCTCTTCACTCACTTGTTGAATTGGAGTTAAGTGGGTGCAAGAAACTCAAGAGTCTAAAAACTAAGTTTCATTTAAAATCTCTACAATACATTCGGGTGGAAGAATGCACAAGTCTCAAGGAATTTTCAGTGTCATCGGAAAAAATAAGGGAGTTGAATTTATGCCACACTGGAATCGAAAATTTGCACTCATCCATAAGGCATTCAAGTAATCTGGAAGTGCTGGATCTGGGTGGCTTAAGACTGAAGAAAATTCCAGAACAGTTATCATGCTTGAGAACATTGACAATGGTCAGGCTTCCTAATTGTGAAGTGCTTGATAATTCGATGCTATATAGGCTATTTGGTGGCATGTTGGCTCTAACTGTAGTGTATTTGACAGACTGTAGTCACATAACTGAACTCCCCAATAACACTGAACATCTTTTAAGATTGGAATGTCTGTTCATATCGAATTGCAGGAAGCTTCGTTCTTTACCAAAACTTCCACCATCCATTACAACCTTAGATGCTTATAACTGCATGTCATTAGAGATAGTGTCAACTTTTAGGCCACTGAACGTGAGTGAAAAATACTTCTCATTTATGAATTGCGTGAAACTGAATGAACAATCACTTCACAGTATCATAGAAGATGCCTATTCTGTGATCAATAGAGCTGCTTGCGAATTTCAGCAAGAAAGAAAGGCTAAAGGTGCTCGTAGTTTGATTTGCTTTCCTGGACGAACAGTACCTGAGTGGTTCAAATATCGGACAGCAAAGGGCTCCATGATTATTGAAGTCCTTCAAAATTCAGACTTGTTGGGTTTTTCTCTGTGTGTCGTTCTTCAGTTTCACTCAGAAAAGACATGTTATGTTGCATTGAAATGTGCGTGCCACATGGGAGATTCTAAGGTGTCAGATTTACCGTACAACAATCTGTTTCTTCCAAATATGAATTCTGATCATGTTTACATATGGAAGAATGAGTTTGCTTCGGATGAGATATTGAAGGTGATTGAAAGAATAAGAGGAAATAATCAAGAGTTGGTCACTGACATAAAACTTTGCTTTGAATTCAGTGTAGAACCTCGTTTTGGGTACGAGGTTGCTAATATCAACGAGGTAGTTGGTATCAAAGAATGTGGGGTGTGCCCATTATATGTCTCTGATTATCAGAAATTCTCTCTGCAAATGGAATTGGAGAAGAATAAGAAGAGGCCTCGAGATGTTGATGAACAACCACCACTTCTTCAGTTGAAGAAACGGAAACTTTATTATGATTCTCATACCAACTCATGTCATGATATTGAGGAACTGGACGCTCTTTTCATGACAATTAATATCACTTGA 3351 0.3772 MATDTASSCVSDKFSLKKYDVFISFRGEDTRNNFTSHLYEAFCRKQIKAYIDYELPRGDEISAALMQAIENSYLSVVVFSENYASSRWCLDELAHILHCKRVQEHIVIPVFYKVEPSHVRNQTGLYEQALEKHERDLKVNLHEIQKWKHALNEAANLAGYDSHTFRIESELIQQIVKDILQKLNHKYPLTDLKGLVGINYNYAKIELLLREFQTIGIWGMGGIGKTTLAKATFVKHSPHYEGCCFLANVRENSAKHDSGLEDLRYKLLSCLLPEEDLFTGTLTSFLESRVSRKKVFIVLDAVSTLEQLEYLVGEPHCFSLESKIVITSRDKHVLSKGVDVIYKVKELKFQESLALLSLNAFNQNLPITGYKELSEKAVVYAKGIPLALKVLGSFLHGKSKIEWKSALRKLVKIPHEDIQKVLRLSYDGLNHEEKNIFLEIACFLKGMLKEHVISLLDGYDFYGAIGIRTLHDKALIIANDHMPLEMHDLIQEMGWEIVREESINEPERRSRLWDCEEVYDVLANDKGTDKVEGIMLDVSRIKDIHLSARTFKRMPNMRFLKFFSALNHHSSHVYLPKGLKFFPNKIKYLEWYGYPLKSLPPTFCPENLVELHMPNSHVKKLWNGVQDLVNLKEINLNGCKQLKELPNFSKASSLKVVSLVDCESLHYVHSSILSLHSLVELELSGCKKLKSLKTKFHLKSLQYIRVEECTSLKEFSVSSEKIRELNLCHTGIENLHSSIRHSSNLEVLDLGGLRLKKIPEQLSCLRTLTMVRLPNCEVLDNSMLYRLFGGMLALTVVYLTDCSHITELPNNTEHLLRLECLFISNCRKLRSLPKLPPSITTLDAYNCMSLEIVSTFRPLNVSEKYFSFMNCVKLNEQSLHSIIEDAYSVINRAACEFQQERKAKGARSLICFPGRTVPEWFKYRTAKGSMIIEVLQNSDLLGFSLCVVLQFHSEKTCYVALKCACHMGDSKVSDLPYNNLFLPNMNSDHVYIWKNEFASDEILKVIERIRGNNQELVTDIKLCFEFSVEPRFGYEVANINEVVGIKECGVCPLYVSDYQKFSLQMELEKNKKRPRDVDEQPPLLQLKKRKLYYDSHTNSCHDIEELDALFMTINIT 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2229 1116 SUPERFAMILY L domain-like 486 878 - -
Prci12g2229 1116 Gene3D - 199 341 IPR027417 -
Prci12g2229 1116 Pfam NB-ARC domain 210 426 IPR002182 GO:0043531
Prci12g2229 1116 SMART till_3 18 157 IPR000157 GO:0007165
Prci12g2229 1116 Pfam Leucine Rich Repeat 607 626 IPR011713 -
Prci12g2229 1116 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 716 IPR044974 GO:0006952
Prci12g2229 1116 FunFam Disease resistance protein RPS4 528 720 - -
Prci12g2229 1116 Gene3D - 15 188 IPR035897 -
Prci12g2229 1116 ProSiteProfiles TIR domain profile. 17 183 IPR000157 GO:0007165
Prci12g2229 1116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 438 IPR027417 -
Prci12g2229 1116 Pfam C-JID domain 912 1057 IPR045344 -
Prci12g2229 1116 Pfam TIR domain 18 198 IPR000157 GO:0007165
Prci12g2229 1116 Gene3D - 347 430 IPR042197 -
Prci12g2229 1116 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 185 - -
Prci12g2229 1116 Gene3D Ribonuclease Inhibitor 534 695 IPR032675 -
Prci12g2229 1116 Gene3D Ribonuclease Inhibitor 696 852 IPR032675 -
Prci12g2229 1116 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 160 IPR035897 -
Prci12g2229 1116 PRINTS Disease resistance protein signature 381 395 - -
Prci12g2229 1116 PRINTS Disease resistance protein signature 673 689 - -
Prci12g2229 1116 PRINTS Disease resistance protein signature 214 229 - -
Prci12g2229 1116 PRINTS Disease resistance protein signature 289 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2229 Prci-Chr12 39854847 39859806 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2229 15 855 WRKY Transcription Factor Family AT4G12020 32.947 2.17e-107 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2229 - - pcin:129288061 2213.34