Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2219 ATGAAATGTTCATGCAAGAAAGATTTTGGCCTATGTTCTGCTCATTCAACATCCCCCGATTTTCTTGGATGCTCATCATGGAAAACTTCATCTGGATCTCATGGACAAGAATCGCCTATGTCCAAAAGTTTGAGCTTAAAAATGGGAGTTCTCCCACAGCAATCTCTTAAAACTAAGCTGTTTAGTTTTCAATTTCAAGAACAGGACTCATGTTCAACCCAGCCAACTGATCAATCTTATCATAGAGGTGTCTCAGCCAACTCAGGTCACTTTTCTATGCAATATAGCAGTTCTTCTGCTCATTCTAGCAGAACTGAGGGAAAGTCCTCAGGAGGTCTCATCAGGTCATCAGTGGGGAGACAGGATTTTACCTTCCCTTCACTCCTGGATCATAATCAATCAATTATCCATCATGCTCAACTAATGGGAATGGCTCCTCTTCGAGTTCCGCTTCCGCTTGACTTCACTGAAGAACCCATATTTGTGAATGCAAAACAGTATCACGCAATTCTGAGGCGAAGGCAGTATCGATCGAAACTCGAAGCACAGAACAAGCTCAACAAAACTCGGAAACCATATCTTCACGAGTCTCGGCACCTACATGCATTGAAGAGAGCCAGAGGTTCTGGTGGACGCTTTCTTAACACCAAAAAGCTTCAAGAATCATCAGAACTACCTTCAGCAAGCCAACGCCTAAGGTTGAATCGTCAGAGTGTTAATACACCAGAATCTGAATTTCTTGGCTTAGAAAATTGCAGAGACAGTGCATCGACCGTCACCTGTCCTGATATCGCAAGTGCTTCTAACAGTGACGATATCTTCCAGCGGCAGCATGAATCAGATTTGAGGTGGTGTGGAAGATATCCTTCTCATATTGGAAGCAAAATGCAAAGTTTCTCAGTTGATATGAGTGGTGATGAGAATCAACACCGTGTATCGGTCTTCATGTGA 951 0.4311 MKCSCKKDFGLCSAHSTSPDFLGCSSWKTSSGSHGQESPMSKSLSLKMGVLPQQSLKTKLFSFQFQEQDSCSTQPTDQSYHRGVSANSGHFSMQYSSSSAHSSRTEGKSSGGLIRSSVGRQDFTFPSLLDHNQSIIHHAQLMGMAPLRVPLPLDFTEEPIFVNAKQYHAILRRRQYRSKLEAQNKLNKTRKPYLHESRHLHALKRARGSGGRFLNTKKLQESSELPSASQRLRLNRQSVNTPESEFLGLENCRDSASTVTCPDIASASNSDDIFQRQHESDLRWCGRYPSHIGSKMQSFSVDMSGDENQHRVSVFM 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2219 316 ProSiteProfiles NF-YA/HAP2 family profile. 156 216 IPR001289 GO:0003700|GO:0006355
Prci12g2219 316 SMART cbf3 155 216 IPR001289 GO:0003700|GO:0006355
Prci12g2219 316 PRINTS CCAAT-binding transcription factor subunit B signature 190 213 IPR001289 GO:0003700|GO:0006355
Prci12g2219 316 PRINTS CCAAT-binding transcription factor subunit B signature 159 181 IPR001289 GO:0003700|GO:0006355
Prci12g2219 316 MobiDBLite consensus disorder prediction 91 116 - -
Prci12g2219 316 Gene3D - 156 217 - -
Prci12g2219 316 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 38 259 IPR001289 GO:0003700|GO:0006355
Prci12g2219 316 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 158 213 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2219 Prci-Chr12 39801158 39805981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2219 6 316 CCAAT-HAP2 Transcription Factor Family AT1G17590 40.708 5.88e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Prci12g2219 CBFB_NFYA 2.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2219 K08064 - gmx:100500765 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g0610 13 4928818 4937038 Prci12g2219 12 39801158 39805981 CCT
Prci12g2219 12 39801158 39805981 Prci12g2219 12 39801158 39805981 ECH