Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2218 ATGGAAAGGGATCTGTTGACTTTGTTTGTTAGTATACTGTACAGTCAAGCTATGCGCTCTTTTGTGAGATGGACAGAGGTAACTTTAGATGTTGAAGATTTTTACAACCAATGTGACCCCGAGAAGGAGAATTTGTGCTTGTATGGACTTCCTAGTGAGCAGTGGGAAGTGAACCTACCTGCTGAAGAAGTTCCTCCAGAACTTCCGGAGCCTGTTCTGGGAATTAATTTTGCCAGGGATGGCATGCAAGAAAAAGACTGGTTGTCTTTAGTAGCAGTTCATAGTGATACATGGTTACTTTCTGTGGCTTTCTATTTTGGAGCCAGATTTGGGTTTGATAGAGCTGACAGGAAACGACTTTTCAATATGATCAATGATATGCCAACAATTTTTGAAGTTGTTACTGGTGCAGCAAAGAAAGAAGTGAAGGAGAAGTCTTCAAATCAAAGTGGCAGCAAATCTAAGTCTGGCTCTAAGAGATCTTTAGAAAGTCAGGGAAGACAATCGAAGGCATTGCAACCAAAAGATGAAGACGAAGTTCCAGACGAGGAAGTTGAAGATGATGAACACGGGGATACCTTGTGCGGGGCCTGTGGCGAGAATTACGGTACCGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAACTGGTTCCATGGAAAATGTGTGAAGATTACCCCCGCCAGGGCAGAGCATATCAAGCAGTACAAATGCCCATCATGCAGTAACAAGAGAGCTCGGTGTTGA 747 0.4351 MERDLLTLFVSILYSQAMRSFVRWTEVTLDVEDFYNQCDPEKENLCLYGLPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLSVAFYFGARFGFDRADRKRLFNMINDMPTIFEVVTGAAKKEVKEKSSNQSGSKSKSGSKRSLESQGRQSKALQPKDEDEVPDEEVEDDEHGDTLCGACGENYGTDEFWICCDICENWFHGKCVKITPARAEHIKQYKCPSCSNKRARC 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2218 248 Pfam Alfin 27 136 IPR021998 GO:0006355|GO:0042393
Prci12g2218 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 243 IPR013083 -
Prci12g2218 248 FunFam PHD finger alfin-like protein 187 243 - -
Prci12g2218 248 Pfam PHD-finger 195 244 IPR019787 -
Prci12g2218 248 SMART PHD_3 194 242 IPR001965 -
Prci12g2218 248 ProSitePatterns Zinc finger PHD-type signature. 195 241 IPR019786 -
Prci12g2218 248 MobiDBLite consensus disorder prediction 142 190 - -
Prci12g2218 248 ProSiteProfiles Zinc finger PHD-type profile. 192 244 IPR019787 -
Prci12g2218 248 SUPERFAMILY FYVE/PHD zinc finger 184 245 IPR011011 -
Prci12g2218 248 PANTHER CPG BINDING PROTEIN 26 247 IPR045104 GO:0006355|GO:0042393
Prci12g2218 248 MobiDBLite consensus disorder prediction 149 169 - -
Prci12g2218 248 CDD PHD_AL_plant 194 244 IPR044104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2218 Prci-Chr12 39794596 39798725 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2218 27 247 Alfin-like Transcription Factor Family AT3G42790 74.208 1.25e-107 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Prci12g2218 Alfin 7.3e-58 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2218 K26274 - gmx:100170700 377.096