Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2217 ATGGACGCGCGCACAAATTATAATCCTCGCACTGTTGAAGAGGTTTTCAGGGATTTCAAGGGCCGAAGAACTGGTCTGATTAAAGCCCTTACAACGGATGTTGAAGATTTTTACAACCAATGTGACCCCGAGAAGGAGAATTTGTGCTTGTATGGACTTCCTAGTGAGCAGTGGGAAGTGAACCTACCTGCTGAAGAAGTTCCTCCAGAACTTCCGGAGCCTGTTCTGGGAATTAATTTTGCCAGGGATGGCATGCAAGAAAAAGACTGGTTGTCTTTAGTAGCAGTTCATAGTGATACATGGTTACTTTCTGTGGCTTTCTATTTTGGAGCCAGATTTGGGTTTGATAGAGCTGACAGGAAACGACTTTTCAATATGATCAATGATATGCCAACAATTTTTGAAGTTGTTACTGGTGCAGCAAAGAAAGAAGTGAAGGAGAAGTCTTCAAATCAAAGTGGCAGCAAATCTAAGTCTGGCTCTAAGAGATCTTTAGAAAGTCAGGGAAGACAATCGAAGGCATTGCAACCAAAAGATGAAGACGAAGTTCCAGACGAGGAAGTTGAAGATGATGAACACGGGGATACCTTGTGCGGGGCCTGTGGCGAGAATTACGGTACCGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAACTGGTTCCATGGAAAATGTGTGAAGATTACCCCCGCCAGGGCAGAGCATATCAAGCAGTACAAATGCCCATCATGCAGTAACAAGAGAGCTCGGTGTTGA 756 0.4444 MDARTNYNPRTVEEVFRDFKGRRTGLIKALTTDVEDFYNQCDPEKENLCLYGLPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLSVAFYFGARFGFDRADRKRLFNMINDMPTIFEVVTGAAKKEVKEKSSNQSGSKSKSGSKRSLESQGRQSKALQPKDEDEVPDEEVEDDEHGDTLCGACGENYGTDEFWICCDICENWFHGKCVKITPARAEHIKQYKCPSCSNKRARC 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2217 251 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Prci12g2217 251 MobiDBLite consensus disorder prediction 152 172 - -
Prci12g2217 251 CDD PHD_AL_plant 197 247 IPR044104 -
Prci12g2217 251 PANTHER CPG BINDING PROTEIN 8 250 IPR045104 GO:0006355|GO:0042393
Prci12g2217 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Prci12g2217 251 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Prci12g2217 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Prci12g2217 251 FunFam PHD finger alfin-like protein 190 246 - -
Prci12g2217 251 SMART PHD_3 197 245 IPR001965 -
Prci12g2217 251 MobiDBLite consensus disorder prediction 145 193 - -
Prci12g2217 251 Pfam PHD-finger 198 247 IPR019787 -
Prci12g2217 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2217 Prci-Chr12 39794596 39799131 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2217 7 250 Alfin-like Transcription Factor Family AT3G42790 75.820 1.12e-125 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Prci12g2217 Alfin 5.3e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2217 K26274 - gmx:100170700 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g0613 13 4947158 4951638 Prci12g2217 12 39794596 39799131 CCT
Prci12g2217 12 39794596 39799131 Prci13g0613 13 4947158 4951638 ECH
Prci12g2217 12 39794596 39799131 Prci12g2217 12 39794596 39799131 ECH