Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2216 ATGCGCTCTTTTGTGAGATGGACAGAGGTAACTTTAGATGTTGAAGATTTTTACAACCAATGTGACCCCGAGAAGGAGAATTTGTGCTTGTATGGACTTCCTAGTGAGCAGTGGGAAGTGAACCTACCTGCTGAAGAAGTTCCTCCAGAACTTCCGGAGCCTGTTCTGGGAATTAATTTTGCCAGGGATGGCATGCAAGAAAAAGACTGGTTGTCTTTAGTAGCAGTTCATAGTGATACATGGTTACTTTCTGTGGCTTTCTATTTTGGAGCCAGATTTGGGTTTGATAGAGCTGACAGGAAACGACTTTTCAATATGATCAATGATATGCCAACAATTTTTGAAGTTGTTACTGGTGCAGCAAAGAAAGAAGTGAAGGAGAAGTCTTCAAATCAAAGTGGCAGCAAATCTAAGTCTGGCTCTAAGAGATCTTTAGAAAGTCAGGGAAGACAATCGAAGGCATTGCAACCAAAAGATGAAGACGAAGTTCCAGACGAGGAAGTTGAAGATGATGAACACGGGGATACCTTGTGCGGGGCCTGTGGCGAGAATTACGGTACCGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAACTGGTTCCATGGAAAATGTGTGAAGATTACCCCCGCCAGGGCAGAGCATATCAAGCAGTACAAATGCCCATCATGCAGTAACAAGAGAGCTCGGTGTTGA 696 0.4397 MRSFVRWTEVTLDVEDFYNQCDPEKENLCLYGLPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLSVAFYFGARFGFDRADRKRLFNMINDMPTIFEVVTGAAKKEVKEKSSNQSGSKSKSGSKRSLESQGRQSKALQPKDEDEVPDEEVEDDEHGDTLCGACGENYGTDEFWICCDICENWFHGKCVKITPARAEHIKQYKCPSCSNKRARC 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2216 231 CDD PHD_AL_plant 177 227 IPR044104 -
Prci12g2216 231 SMART PHD_3 177 225 IPR001965 -
Prci12g2216 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 226 IPR013083 -
Prci12g2216 231 MobiDBLite consensus disorder prediction 132 152 - -
Prci12g2216 231 ProSitePatterns Zinc finger PHD-type signature. 178 224 IPR019786 -
Prci12g2216 231 SUPERFAMILY FYVE/PHD zinc finger 167 228 IPR011011 -
Prci12g2216 231 FunFam PHD finger alfin-like protein 170 226 - -
Prci12g2216 231 ProSiteProfiles Zinc finger PHD-type profile. 175 227 IPR019787 -
Prci12g2216 231 PANTHER CPG BINDING PROTEIN 10 230 IPR045104 GO:0006355|GO:0042393
Prci12g2216 231 Pfam Alfin 10 119 IPR021998 GO:0006355|GO:0042393
Prci12g2216 231 MobiDBLite consensus disorder prediction 125 173 - -
Prci12g2216 231 Pfam PHD-finger 178 227 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2216 Prci-Chr12 39794596 39799132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2216 10 230 Alfin-like Transcription Factor Family AT3G42790 74.208 1.57e-107 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Prci12g2216 Alfin 8.7e-58 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2216 K26274 - gmx:100170700 377.096