Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci12g2182 | ATGGGAAATCAAAAGCATAAGTGGACCGCGGAGGAAGAAGAAGCTTTGCTCGCTGGCATTGGGAAGCATGGCCCCGGGAAGTGGAAGAATATTCTCAAAGATCCTGAATTTGCCCCGTTTCTCACTCACCGTTCCAACATCGATCTGAAGGATAAATGGCGAAATTTAAGTGTCAGTACTGCAGCTCAAGGATCTAAAGAAAAAGCTAGGAATCCAAAGATTAAAACTACGGAAGCTTCTACACTTGCGGGCACGCAAAATGCTTCTGTTGCTCCTCCGCTTCGTCAATGTGCACCTTCTGATGCCGCCACAGATGATTCTTCTCACAATGCACAGGATGTCAAACATGCTCCACAGTACAATGGAATGATTTTTGAAGCCCTATCAATGATAAGTGATTCCAATGGATCTGACTTAAATGCTATTGTTAGCTTCATTGAGCAAAAGCATGAGGTTCCTCAAAATTTCAGACGAGCAGTAGGTGCAAGGTTGAGGAAACTTGTTGATCAAGGAAAACTTGAAAAGGTACAAAACTGTTACAAGATAAAGAGAGCGACGCCCGTGGAGACAAAACCACCTGTACCAAAGCAAAACGATTCTGGGTCACTTCAACCACCAGCCTCTGGATTTACAGCATCTCAGGAGACAGAAATGGATGCTGCGGAGATCGCGGCATACAGAATTGCTGAAGCAGAGCACAAATCACATTGGGCTGCTGAAGCAGTCAAGGAGGCGGAAAAATTCTCAAAGTTGGTTGAAGATGCCGATGCAATGTTAAAGCTAGCGAAAGAGATTTATGAGCAATGTTCACGGGGTGAAATCATCCTCTTTGCTTAG | 837 | 0.4456 | MGNQKHKWTAEEEEALLAGIGKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVSTAAQGSKEKARNPKIKTTEASTLAGTQNASVAPPLRQCAPSDAATDDSSHNAQDVKHAPQYNGMIFEALSMISDSNGSDLNAIVSFIEQKHEVPQNFRRAVGARLRKLVDQGKLEKVQNCYKIKRATPVETKPPVPKQNDSGSLQPPASGFTASQETEMDAAEIAAYRIAEAEHKSHWAAEAVKEAEKFSKLVEDADAMLKLAKEIYEQCSRGEIILFA | 278 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci12g2182 | 278 | MobiDBLite | consensus disorder prediction | 187 | 214 | - | - | |
| Prci12g2182 | 278 | Gene3D | - | 8 | 85 | - | - | |
| Prci12g2182 | 278 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 116 | 184 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Prci12g2182 | 278 | FunFam | Telomere repeat-binding factor 1 | 8 | 87 | - | - | |
| Prci12g2182 | 278 | Gene3D | - | 112 | 196 | IPR036388 | - | |
| Prci12g2182 | 278 | SMART | sant | 4 | 59 | IPR001005 | - | |
| Prci12g2182 | 278 | MobiDBLite | consensus disorder prediction | 193 | 214 | - | - | |
| Prci12g2182 | 278 | SUPERFAMILY | Homeodomain-like | 2 | 58 | IPR009057 | - | |
| Prci12g2182 | 278 | FunFam | Telomere repeat-binding factor 1 | 2 | 58 | - | - | |
| Prci12g2182 | 278 | Pfam | Myb-like DNA-binding domain | 6 | 56 | IPR001005 | - | |
| Prci12g2182 | 278 | ProSiteProfiles | Myb-like domain profile. | 1 | 57 | IPR001005 | - | |
| Prci12g2182 | 278 | PANTHER | SINGLE MYB HISTONE 4 | 1 | 276 | IPR044597 | GO:0003691 | |
| Prci12g2182 | 278 | SUPERFAMILY | "Winged helix" DNA-binding domain | 116 | 196 | IPR036390 | - | |
| Prci12g2182 | 278 | SMART | h15plus2 | 114 | 179 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Prci12g2182 | 278 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 1 | 61 | IPR017930 | - | |
| Prci12g2182 | 278 | MobiDBLite | consensus disorder prediction | 75 | 93 | - | - | |
| Prci12g2182 | 278 | MobiDBLite | consensus disorder prediction | 60 | 113 | - | - | |
| Prci12g2182 | 278 | CDD | SANT_TRF | 6 | 56 | - | - | |
| Prci12g2182 | 278 | Pfam | linker histone H1 and H5 family | 118 | 177 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci12g2182 | Prci-Chr12 | 39251997 | 39264765 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci12g2182 | 1 | 277 | Single Myb Histone (SMH) Gene Family | AT1G17520 | 51.379 | 1.78e-85 | 255 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB-related | Prci12g2182 | Linker_histone | 4.1e-10 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci12g2182 | K09422 | - | cave:132188703 | 348.977 |