Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2179 ATGGCAGGTCTGGCTCCAGAAAGAACACAATTTGATGGTTGTCAATATGATGCTAAGATGACTGAATTGCTTTCCACTGATGGAGAAGAATTCTTCATCTCATATGATGAAGTTTACGACACTTTTGATGCCATGGGGTTGCAAGAAAATCTTTTAAGAGGCATTTATGCTTTTGGTTTTGAGAGGCCATCGGCAATTCAACAAAGAGGAATTGTTCCTTTCTGCAGAGGTCTTGATGTGATTCAACAGGCTCAATCTGGGACTGGGAAAACGGCCACTTTCTGTTCTGGAATTTTACAACAGCTTGATTATGGATTGGTTGAGTGCCAGGCCTTGGTTTTAGCACTAACAAGGGAGCTAGCACAGCAAATTGAGAAAGTTATGAGAGCTCTTGGTGATTACCTTGGTGTGAGGGTTCATGCTTGTGTTGGGGGCACAAGTGTACGTGAGGATCAGCGAATGCTCCAATCTGGTGTCCATGTTGTTGTTGGCACTCCCGGCCGTGTGTTTGACATGCTACGAAGGCAATCTCTTTGCCCAGACCACATAAAGATGTTTGCCTTAGATGAAGCTGATGAAATGCTTTCACGTGGTTTCAAGGACCAGATCTATGACATATTCCAGCTACTGCCTGGTAAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCAGAAGCCCTTGATATTACAAGGAAGTTTATGAATAAACCGGTGAGAATCTTGGTGAAGCGTGATGAACTGACCCTTGAGGGTATCAAACAGTTTCATGTCAATGTTGAGAAAGAAGAGTGGAAGCTGGAGACATTATGTGATCTTTATGAAACGCTAGCTATCACACAAAGTGTCATTTTTGTGAATACTCGCAGAAAGGTGGACTGGCTCACTGATAAGATGAGAAGCAATGATCATACTGTCTCAGCTACACATGGTGACATGGATCAAAACGCTCGTGACATTATCATGCGTGAATTCCGGTCTGGCTCATCGCGAGTTCTGATCACAACTGACCTCTTGGCTCGAGGTATAGACGTGCAGCAAGTCTCTTTGGTTATAAACTATGATCTTCCAACCCAACCTGAAAACTATCTGCATAGGATTGGGAGAAGTGGAAGGTTTGGAAGAAAAGGTGTTGCTATAAACTCTGTGAGTATGGATGATTTGAGAATGTTGTCTGATATTCAGAAGTTCTATAATGTGACCATAGAGGAGCTGCCATCAAATGTTACTGATCTGCTTTGA 1242 0.43 MAGLAPERTQFDGCQYDAKMTELLSTDGEEFFISYDEVYDTFDAMGLQENLLRGIYAFGFERPSAIQQRGIVPFCRGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLALTRELAQQIEKVMRALGDYLGVRVHACVGGTSVREDQRMLQSGVHVVVGTPGRVFDMLRRQSLCPDHIKMFALDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALDITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNARDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINSVSMDDLRMLSDIQKFYNVTIEELPSNVTDLL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2179 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Prci12g2179 413 SMART helicmild6 293 374 IPR001650 -
Prci12g2179 413 SMART ultradead3 59 256 IPR014001 -
Prci12g2179 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Prci12g2179 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
Prci12g2179 413 Gene3D - 249 413 IPR027417 -
Prci12g2179 413 Pfam DEAD/DEAH box helicase 65 226 IPR011545 GO:0003676|GO:0005524
Prci12g2179 413 Gene3D - 32 248 IPR027417 -
Prci12g2179 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Prci12g2179 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Prci12g2179 413 PANTHER RNA HELICASE 36 397 - -
Prci12g2179 413 CDD DEADc_EIF4A 44 242 - -
Prci12g2179 413 FunFam Eukaryotic initiation factor 4A-III 248 413 - -
Prci12g2179 413 CDD SF2_C_DEAD 253 381 - -
Prci12g2179 413 FunFam Eukaryotic initiation factor 4A-II 28 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2179 Prci-Chr12 39228116 39230831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2179 1 413 Eukaryotic Initiation Factors Gene Family AT1G72730 85.024 0.0 730
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2179 K03257 - gmx:100817948 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g0628 13 5042117 5045431 Prci12g2179 12 39228116 39230831 CCT
Prci12g2179 12 39228116 39230831 Prci12g2179 12 39228116 39230831 ECH