Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2177 ATGGAACCTCGAGTTGGAAACAAGTTTCGTCTTGGCCGGAAGATTGGTAGCGGATCGTTTGGAGAGATCTACCTCGGTACTAATATTCAGACAAATGAAGAGGTTGCAATTAAGCTTGAAAATGTCAAGACCAAGCACCCGCAACTGTTGTATGAATCGAAGTTGTATAAGATACTACAAGGAGGAACTGGAATCCCAAACTTGAAATGGTTTGGTGTTGAAGGAGACTACAATGTGCTTGTAATGGATTTATTGGGGCCTAGTCTTGAAGATTTATTCAATTTTTGTAGTCGGAAGTTGTCCCTCAAAACTGTTCTCATGCTTGCTGATCAGATGATAAATCGAGTTGAATTTGTCCATTCCAAATCATTTTTACATCGTGACATCAAGCCAGACAACTTCCTCATGGGCTTAGGGAGGCGTGCAAATCAAGTGTACATCATTGACTTTGGTCTTGCTAAGAAATATAGAGACACTTCTACTCATCAGCATATTCCTTACAGAGAGAATAAGAATTTAACAGGAACTGCAAGATATGCTAGCATGAACACTCATCTTGGAATTGAGCAAAGTCGTAGGGATGATTTAGAGTCTCTTGGATACGTTCTTATGTATTTTTTGAGAGGAAGTCTTCCTTGGCAGGGACTGAAAGCTGGTACTAAGAAGCAAAAGTATGAAAAGATCAGTGAGAAGAAAGTTTCTACTTCTATTGAGGCACTCTGCCGTGGTTATCCTTCAGAATTTGCATCTTACTTCCATTATTGTCGGTCACTTCGGTTTGATGATAAACCTGATTATGCTTATCTAAAGAGGCTTTTCCGTGACCTTTTTATTCGTGAAGGATTTCAGTTTGATTATGTCTTTGACTGGACCATTTTGAAATATCAGCAATCTCAAGTTCCCACTCCTCCTGCACGTGGTATTGTTCCTGGTGTTGGACCAAGTTCTGGCATGCCACCAACGGTTGCAAATGCTGATAGACATTTAGGCGGGGAAGATAGTAGGCACACTGGTTGGACTTCATCGGATCCTACTCGGAGGAGAAACTCTGGCCCTATTGCAAATGATGGCATTTTACCAAGGCAAAAAGCCCCAGTTACAAGTGACTTGACTGGTTCTAAAGATGCTATGTTGTCAAGCTCCATTCTCTTCAGGGCAAGTGGGTCACAAAGGCGAGGTGCTGCTTCTGGCAGTCGTGATGCAGTTGTTGGCAGTGAGACTGAACCCTCTCGCCCTCTTGCAGTGGATGCGAGTCCTGGAATGCTTCGTAAAGTCTCTGGTGCTCAAAGAAGTTCTATTATTTCATCAGAACAAAACCGGACTTCATCTGGAAGAAACTTGTCAAATGTAAAGAATTTCGACTCAACTCTCAGAGGTATTGAGGGCCTGCATTTTAATGATGAGAGGGTGCAGTATTAG 1419 0.4221 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYKILQGGTGIPNLKWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIEALCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQVPTPPARGIVPGVGPSSGMPPTVANADRHLGGEDSRHTGWTSSDPTRRRNSGPIANDGILPRQKAPVTSDLTGSKDAMLSSSILFRASGSQRRGAASGSRDAVVGSETEPSRPLAVDASPGMLRKVSGAQRSSIISSEQNRTSSGRNLSNVKNFDSTLRGIEGLHFNDERVQY 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2177 472 MobiDBLite consensus disorder prediction 427 446 - -
Prci12g2177 472 MobiDBLite consensus disorder prediction 328 342 - -
Prci12g2177 472 CDD STKc_CK1_delta_epsilon 8 282 - -
Prci12g2177 472 MobiDBLite consensus disorder prediction 428 446 - -
Prci12g2177 472 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci12g2177 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Prci12g2177 472 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci12g2177 472 MobiDBLite consensus disorder prediction 301 372 - -
Prci12g2177 472 FunFam Casein kinase I isoform delta-like 1 308 - -
Prci12g2177 472 FunFam Putative Casein kinase I 1 85 - -
Prci12g2177 472 Gene3D Transferase(Phosphotransferase) domain 1 1 306 - -
Prci12g2177 472 MobiDBLite consensus disorder prediction 387 416 - -
Prci12g2177 472 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Prci12g2177 472 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci12g2177 472 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Prci12g2177 472 PANTHER CASEIN KINASE-RELATED 9 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2177 Prci-Chr12 39214236 39221456 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2177 7 223 EF-hand Containing Proteins AT2G17890 25.778 1.23e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Prci12g2177 Pkinase 8.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2177 K02218 - gmx:100778165 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g0629 13 5046938 5051843 Prci12g2177 12 39214236 39221456 CCT