Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2143 ATGGATTCTTCTTTTCTCATGGGTAGCATAATTTCAGAGCCTCGTGATGATATGGAATTTGAATCGCATGAAGCTGCCTATGCATTTTATAAGGAATATGCTAGGTCTGTGGGGTTTGGCACTGCCAAATTGAGTAGTCGTCGGTCTAGAGCATCAAAAGAATTTATTGATGCCAAGTTTTCATGTATAAGATATGGTAATAAACAGCAATCTGATGATGCAATCAATCCACGCCCGTCTCCAAAAATTGGTTGTAAAGCAAGCATGCATGTGAAAAGAAGGCAAGATGGCAAGTGGTATGTCTATAGCTTTGTGAAAGAGCACAATCATGAGCTTTTACCTGCTCAGGCTCATTTTTTCAGGAGTCATAGGAGTAATGATCCACTTGGTAATGATGTCCGCATGCGAAGGCGGAAGAATTTGACTGGTTTCCAATTGTTTAGTGCATATCAAAATGTTGATTGTCTAGAGAACTTTTTGAGAAATCTACATGATAAGGGACGGAGTTTGGTTCTAGAAACTGGGCATGCCCAATTGCTTCTTGAACTCTTTATGCACATGCAGGAAGAAAATCCAAAATTCTTCTATGCTGTTGATTTGAATGAAGAGCATCGACTGAGAAATGTGTTCTGGGTTGATGCCAAAGGTGTGGAAGATTATACTTACTTTGGTGATGTTGTTTCTTTTGACACAACATATTTCACCAGCAAGTATAAAATACCATTGGTACTTTTTATTGGAGTAAACCATCATATTCAACCCACATTGCTTGGTTGTGCGTTGATTGCTGATGAGACCAATTACACTTTTGCTTGGTTACTGCAAACATGGTTAATTGCAATGGGGGGCCGAGCTCCACAAGTGATTCTTACTGATCAAAATGAGGCCATGAAAATAGCTGTTGCTGCTGTTCTTCCAGGTACACGACATTGTTTTTGTTTGTGGCATATTTTGGAAAAGATACCAAGACAGCTTGAATTTTTAAGTGCATGGCATGATAATTTCATGGAAAAATTCAACAAATGTATATATAAATCATGGACAGAGGAACAGTTTGAAAAGAGATGGTGGAAGTTGGTTGATAAGTTTAATTTGAGAGATGTTGGATGGATCCAATCTTTATACAATGATCGGACACGTTGGGTGCCAACTTTTATGAGGGAGATCTCTTTTGTTGGATTGTCCACTAGCTCTCGTGCAGAAAGTTTAAGTGCTTTGTTTGACAACTATGTTCAGTGTGATACTTCGTTGAGAGAATTTTTAGAGCGTTACAGAATGATTCTTGAAGAAAGGTACGAAGAAGAAGCCAAAGCAAATTTTGATGCCTGGCATGAAACACCTGAATTAAAATCTCCTTCCCCTTTTGAGAAACAAATGTTATTCGTTTACACGCATGAAATTTTTAAGAAGTTCCAAGTTGAAGTTATGGGTGCGGCTGCATGCCATCTTAAAATGGAAAATGATGGTGTGGCTGCAACATATACTGTGAAAGACTTCGAAGATGATCAAAGTTATGTGGTAGAGTGGAACAAATCTAACTCAGATATATGCTGCTCCTGTCGCTCATTTGAATATAAGGGTTATATTTGTAGGCATGCTATTGTTGTTCTACAAATGTCTGGGTTTTTCAGCTTACCACCCAAGTATGTGTTGCAACGATTGACAAATGCTGCTATGAGCAAGCATCCTATCAGTGAAAGATTAGATGAGGTGCAATCCAAGGTCCGACGGCTCAATGATTTATGTAGACGAGCCATAATATTGGGTGAAGAGGGTTCTTTGTCTCAAGAAAGTTATTATATTGCTTTAGGTGCCATAAGAGAAGCCTTAAAGCAATGCACAAGCATGAACTCTGTTGAGAACGATGCAAGACTTGATGCTTTAGTTACTCAAGTATGCAATGTGGAAGAAGAGCATCAATCTGGTAATGCTTTTAACAAGAAAGTTCCTGATCCAAGGATGACTAGTGGGAACAAGGCTGCGAGGAATGGTGTGGCTGCTAGGGAAGTAGGAATTGCAGAAAATACTGAAGGAAATAAGGGGAAGGCATCTCAACTAGAAGCAGTGAGCGGCCAAGATGGTTTTCACCAAATGGAACTGACAGATATGAGGCAACATAATGTCCTGCCTATGCAGTTTCATAGTATGGTGCCTTCTCTGTTCCATACGTCAACACAGTATCATAACGCATCTGCAACTCACTTGCATGAGAATTGCCTTCCTCGTTAG 2229 0.3952 MDSSFLMGSIISEPRDDMEFESHEAAYAFYKEYARSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDAINPRPSPKIGCKASMHVKRRQDGKWYVYSFVKEHNHELLPAQAHFFRSHRSNDPLGNDVRMRRRKNLTAXFQLFSAYQNVDCLENFLRNLHDKGRSLVLETGHAQLLLELFMHMQEENPKFFYAVDLNEEHRLRNVFWVDAKGVEDYTYFGDVVSFDTTYFTSKYKIPLVLFIGVNHHIQPTLLGCALIADETNYTFAWLLQTWLIAMGGRAPQVILTDQNEAMKIAVAAVLPGTRHCFCLWHILEKIPRQLEFLSAWHDNFMEKFNKCIYKSWTEEQFEKRWWKLVDKFNLRDVGWIQSLYNDRTRWVPTFMREISFVGLSTSSRAESLSALFDNYVQCDTSLREFLERYRMILEERYEEEAKANFDAWHETPELKSPSPFEKQMLFVYTHEIFKKFQVEVMGAAACHLKMENDGVAATYTVKDFEDDQSYVVEWNKSNSDICCSCRSFEYKGYICRHAIVVLQMSGFFSLPPKYVLQRLTNAAMSKHPISERLDEVQSKVRRLNDLCRRAIILGEEGSLSQESYYIALGAIREALKQCTSMNSVENDARLDALVTQVCNVEEEHQSGNAFNKKVPDPRMTSGNKAARNGVAAREVGIAENTEGNKGKASQLEAVSGQDGFHQMELTDMRQHNVLPMQFHSMVPSLFHTSTQYHNASATHLHENCLPR 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2143 743 SMART 26again6 517 544 IPR006564 GO:0008270
Prci12g2143 743 Pfam FAR1 DNA-binding domain 29 114 IPR004330 -
Prci12g2143 743 Pfam MULE transposase domain 227 320 IPR018289 -
Prci12g2143 743 Pfam SWIM zinc finger 507 540 IPR007527 GO:0008270
Prci12g2143 743 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 12 616 IPR031052 GO:0006355
Prci12g2143 743 ProSiteProfiles Zinc finger SWIM-type profile. 506 542 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2143 Prci-Chr12 38789461 38794373 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Prci12g2143 MULE 4.3e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2143 - - gmx:100805273 1249.96