Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2138 ATGTTCCACCTCCATCAACAGAATCATCATCATCAGGCAGTGCATCAGGAGAACATGTCTAATTTGACTGCCTCTGTATCTGCTGAACCAAGTGTTTCAAATATTGGTACTACTTACAATTATCCTCCTCCACCATCAACTTCGTCTCAATCTCAGCCACTGAAGAAAAAGAGAAACCTCCCTGGCAACCCAGACCCAGAAGCTGAAGTGATCGCCTTGTCTCCAAAGACTCTGCTAGCTACGAACAGGTTCATATGCGAGATCTGCAACAAGGGGTTTCAGAGGGACCAGAATCTGCAGCTTCATAGAAGAGGGCACAATCTGCCATGGAAGCTGAAGCAGAGGACGACTAGCAAAGAGATGATGAGGAAGAAGGTGTACGTGTGTCCAGAACCAAGCTGCGTCCACCATGATCCTTCGAGAGCACTCGGAGACCTCACAGGGATCAAGAAACACTTTTGCAGAAAGCACGGAGAGAAGAAATGGAAATGCGAGAAGTGCTCAAAGAGATACGCGGTTCAATCCGATTGGAAGGCTCACTCCAAAACCTGTGGCACGAGAGAGTACAGATGTGACTGTGGAACTCTCTTCTCTAGGAGGGACAGTTTCATAACTCACAGAGCATTCTGTGATGCATTAGCAGAAGAGAGTGCGCGATCTGAAGCAAACCCACGAGTTCCTCTTCCCTCATCACAGCAACACTTCAAAAACCAGATCAGTCTCACTCCTCCTCCTCCTCTCAGGCATGGAATGATTCAGGTCCCCTCTTGGCTTGGTGGCCCACCCACCACCTGTGCGATAGATCAGCACCGTCAACTTCATCATCTAGGCCATGAAAGTCCAAACCCTAACCCTACTAGCCTCGGCCCCACTACCACCACCTCTAGTCTTCTTCCTTCTTACCAACTTCCAGCGCCTTCCTCGCACATGTCAGCCACAGCCTTGCTTCAGAAAGCGGCTCAGATGGGTTCGACCATCAGCAAAACCGGCTCGCCCGTGCTCATCAGGACCCACCACCACAACATTACTAATCACATGTCTGCTACTTCCAGCACTGATCACCACCCTGCTGGTTTAAACTTGTCGTCCTCATCCTCCTCACCTGAAGGTCACGTGACCACCACAACACCGGCCATGGCTTCTTGCCTTCATCTCCTTTTTCTTTCTCTACTTCTGCTCAGTTTGGAGGTGCAAGTTCTTTCGAGGAGGGTTTGA 1215 0.4988 MFHLHQQNHHHQAVHQENMSNLTASVSAEPSVSNIGTTYNYPPPPSTSSQSQPLKKKRNLPGNPDPEAEVIALSPKTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTTSKEMMRKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARSEANPRVPLPSSQQHFKNQISLTPPPPLRHGMIQVPSWLGGPPTTCAIDQHRQLHHLGHESPNPNPTSLGPTTTTSSLLPSYQLPAPSSHMSATALLQKAAQMGSTISKTGSPVLIRTHHHNITNHMSATSSTDHHPAGLNLSSSSSSPEGHVTTTTPAMASCLHLLFLSLLLLSLEVQVLSRRV 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2138 404 FunFam protein indeterminate-domain 12-like 63 133 - -
Prci12g2138 404 MobiDBLite consensus disorder prediction 275 304 - -
Prci12g2138 404 SMART c2h2final6 127 157 IPR013087 -
Prci12g2138 404 SMART c2h2final6 162 182 IPR013087 -
Prci12g2138 404 SMART c2h2final6 84 106 IPR013087 -
Prci12g2138 404 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Prci12g2138 404 Gene3D Classic Zinc Finger 140 220 - -
Prci12g2138 404 SUPERFAMILY beta-beta-alpha zinc fingers 83 182 IPR036236 -
Prci12g2138 404 Pfam Zinc-finger double-stranded RNA-binding 84 106 IPR022755 -
Prci12g2138 404 MobiDBLite consensus disorder prediction 25 68 - -
Prci12g2138 404 MobiDBLite consensus disorder prediction 345 374 - -
Prci12g2138 404 MobiDBLite consensus disorder prediction 279 304 - -
Prci12g2138 404 FunFam protein indeterminate-domain 5, chloroplastic-like 140 219 - -
Prci12g2138 404 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 34 362 IPR031140 -
Prci12g2138 404 Gene3D Classic Zinc Finger 63 133 - -
Prci12g2138 404 MobiDBLite consensus disorder prediction 25 57 - -
Prci12g2138 404 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2138 Prci-Chr12 38738037 38741091 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2138 16 329 IDZ Gene Family AT1G55110 60.606 2.38e-121 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci12g2138 zf-C2H2_jaz 5.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2138 K25870 - gmx:100808344 418.698