Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2086 ATGGCCACGGTACCAGGGCAGCTCGTCTGGGAAATCGTTAAGAGGAACAACTCCTTTTTGGTGAAGGAGTTTGGTAGGGGGACTCAGAGCGTGCAGTTCAGTAAAGAGAGCAACAATCTTTACAACCTTAACTCTTTCAAGTACTCTGGTTTGGCAAACAAGAAAACTATTACTATTCAGCCTGGCGGCAAAGATCAATCTGTGCTGCTGGCAACGACCAAGACAAAGAAGCAGAACAAGCCAGCTGCATTGCTTCATAGGTCTGTCATGAAAAAGGAGTTCAGGAGAATGGCAAAAGCTGTACAGAACCAGGTGGCAGATAACTACTACAGGCCTGATCTCAAGAAGGCTGCCCTTGCAAGGTTGAGTGCCGTTCATAGGAGCCTCAAAGTTGCCAAGTCTGGTGTCAAAAAGAGGAACAGGCAGGCTGTGAAGATTCCTGCTAGGAAGTGA 453 0.4746 MATVPGQLVWEIVKRNNSFLVKEFGRGTQSVQFSKESNNLYNLNSFKYSGLANKKTITIQPGGKDQSVLLATTKTKKQNKPAALLHRSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSAVHRSLKVAKSGVKKRNRQAVKIPARK 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2086 150 PANTHER 60S RIBOSOMAL PROTEIN L28 1 149 IPR002672 GO:0003735|GO:0005840|GO:0006412
Prci12g2086 150 FunFam 60S ribosomal protein L28 5 133 - -
Prci12g2086 150 Gene3D - 6 133 - -
Prci12g2086 150 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2086 Prci-Chr12 38348171 38350418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2086 1 143 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 74.126 2.27e-77 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2086 K02903 - gmx:100500189 276.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g0747 13 6214319 6218463 Prci12g2086 12 38348171 38350418 CCT
Prci12g2086 12 38348171 38350418 Prci13g0747 13 6214319 6218463 ECH
Prci12g2086 12 38348171 38350418 Prci12g2086 12 38348171 38350418 ECH