Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2076 ATGGATGGTCTGAGTTGGGATGCCTTACACGCTGCGGAGAACTTACCTATATTGTGGAGCAATTTAGAGCAGCAAGAGCTTGAAGCAAACTTGAATCCAAGCTTTCCTAATAATTCAATGCAACAGATGCAGAAGCAGGCTCAAACAGGTCATCATCATCACCTGTATCCAAGTTCTGAAAGAGAAGTGATCAAAGAGATGGCTCAATTATCAGAAGCAGAAGCAGAATTAGCAGCTAGAACCAGTTCAAAGACAAGTCTATCACAGCTAGTAGGTGGGTCCAGCTGGGTTGGTGGATCTTACAGAATGAATAACCCATTTGGTAATTTTGATCCTCCAGAATTCAACATGGCCCACCAACATCCACAACTTGTCAATAATGGCTCACAAAATGGTACCTTCTCTGCTGAGTCACTGGATTGCTTGTTCTCAGCTACAAATAGCAACACAGACGCATCTGTAGAAGATGATGGAGTCTCCATGATCTTATCTGAATGCAGAAGATCAAACTTATGGAGCTTTAGTCATAACAATGGAGGAAGTGAATCTGAGAGCACTACCAACGCTGATCATGAAACATTATCTCAAGGTTCCTCAGATCTTTATGCAAATCAAGGAATAAAAATTGCAGAATCCACCAAGGCCAAGTGTTCAAAAAGGAGCATTGATGATGCTTTAGATCAATATCCCTACTTCAGCATTGAAGAAGGTGGTTCAAGTTCATTCAGGCTCGTTAAGGAGAACAACAACAATAATCCACCAAAACCCAAACGACCCAGATGGGATTCCAAGCCTCCATCTTCTTCAAACATCAATTTCAAGCAGCCCCATTCATCATCATCTTCCATGGAAGAACCAGACCCAGATGCCATAGCACAAATGAAAGAGATGATATATAGGGCTGCAGCATACAGGCCTGTGAATTTAGGAATGGAGGTGGTGGAGAAGCCAAAGAGGAAGAATGTGAGGATATCAACAGATCCTCAAACTGTGGCTGCAAGGCTGAGAAGGGAGAGAATAAGTGAAAGAATCAGGGTTTTGCAGAAATTGGTTCCTGGTGGAAGCAAGATGGACACTGCTTCAATGCTTGATGAAGCTGCAAATTACCTCAAGTTTCTAAGATCACAAGTGAAGGCATTAGAGAGTCTAGGAAACAAAGTCGAGGCTATGAATTGTCCTCCTACTAATATTGCCTTCTCTTTTAACCCTTCTTTTCCCATGCAGTTTAACCCTAGCTACCACATCCAACGTTGA 1254 0.4234 MDGLSWDALHAAENLPILWSNLEQQELEANLNPSFPNNSMQQMQKQAQTGHHHHLYPSSEREVIKEMAQLSEAEAELAARTSSKTSLSQLVGGSSWVGGSYRMNNPFGNFDPPEFNMAHQHPQLVNNGSQNGTFSAESLDCLFSATNSNTDASVEDDGVSMILSECRRSNLWSFSHNNGGSESESTTNADHETLSQGSSDLYANQGIKIAESTKAKCSKRSIDDALDQYPYFSIEEGGSSSFRLVKENNNNNPPKPKRPRWDSKPPSSSNINFKQPHSSSSSMEEPDPDAIAQMKEMIYRAAAYRPVNLGMEVVEKPKRKNVRISTDPQTVAARLRRERISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGNKVEAMNCPPTNIAFSFNPSFPMQFNPSYHIQR 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2076 417 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 146 403 IPR045843 GO:0003700|GO:0006355
Prci12g2076 417 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 324 373 IPR011598 GO:0046983
Prci12g2076 417 MobiDBLite consensus disorder prediction 263 286 - -
Prci12g2076 417 MobiDBLite consensus disorder prediction 242 256 - -
Prci12g2076 417 Coils Coil 363 383 - -
Prci12g2076 417 MobiDBLite consensus disorder prediction 177 196 - -
Prci12g2076 417 MobiDBLite consensus disorder prediction 242 287 - -
Prci12g2076 417 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 329 386 IPR036638 GO:0046983
Prci12g2076 417 Pfam Helix-loop-helix DNA-binding domain 334 373 IPR011598 GO:0046983
Prci12g2076 417 Gene3D - 329 392 IPR036638 GO:0046983
Prci12g2076 417 SMART finulus 330 379 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2076 Prci-Chr12 38269094 38271078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2076 128 413 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 49.669 3.34e-74 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci12g2076 HLH 4.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2076 - - vra:106773034 377.867