Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2047 ATGTATGTGAGGTCAAGAAATGAGGAGCAGTCTCCTCAGCTGCTAGATTTGATCCCAAAGGAAGAAGCAAGAACCCAAAACAGCAGCAGCAACAAGTCTTGTGAGGAGAGAAAGCTTGAGCTCACACTTGGTCCACCTGGTGAAGATTGGTCCCTCAATCATAACACAAACGTGACCAGTAGTGATGAATCTCTACTCTCTCTTGGTTTATTCTCTCAGCAAACCCAGAAAATCTCTGCCTCTTCTTGGGCTCCTTCCAAGGGGTCATCATTTCTTCAGTTTCCATCATGTAGCCCTCAGGGTCTGCCAGGATTAAACCTGCAGAATTCAGAGAAGAAAGCTTTCTCATCATCATGCTCATCTGCTAATCCAGCTGTGCCCTCTAATACCTCTCAGAAAAGAACTGCTCCTGGGCCAGTAGTGGGTTGGCCTCCAATTCGTTCGTTTAGGAAGAAACTTGCAAGCAACAGCTGTTCTAAGACAGCTTCTGAGACACAACAGCAGCAAGATGTTGCAGACAAGGTTGCTGGAAAGAAACCTGTTGTTGACAACGTTGGTAAAGGTCTGTTTGTGAAGATCAATATGGATGGAGTTCCCATCGGAAGAAAAGTAGACCTCAATGCTTATGACAGCTATGAAAATCTCTCCTCTGCTGTTGATGAACTCTTCAGATGCCTCCTTGCTGCTCAAAGAGATTCCACTGCTGGAGGAATCCAGAACAAGGAAGAGGAAGAAAAAGCTATAACAGGTTTATTGGATGGAAGTGGAGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTCGTTGGGGACGTGCCATGGCACATGTTCGTATCAACAGTGAAGAGGCTGCGTGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCTTGGTAACAAGCAAGCCAAGAAAACCAATTGA 930 0.4505 MYVRSRNEEQSPQLLDLIPKEEARTQNSSSNKSCEERKLELTLGPPGEDWSLNHNTNVTSSDESLLSLGLFSQQTQKISASSWAPSKGSSFLQFPSCSPQGLPGLNLQNSEKKAFSSSCSSANPAVPSNTSQKRTAPGPVVGWPPIRSFRKKLASNSCSKTASETQQQQDVADKVAGKKPVVDNVGKGLFVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFRCLLAAQRDSTAGGIQNKEEEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGNKQAKKTN 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2047 309 MobiDBLite consensus disorder prediction 1 49 - -
Prci12g2047 309 Gene3D - 183 303 - -
Prci12g2047 309 SUPERFAMILY CAD & PB1 domains 184 289 - -
Prci12g2047 309 ProSiteProfiles PB1 domain profile. 188 292 IPR000270 GO:0005515
Prci12g2047 309 FunFam Auxin-responsive protein 183 304 - -
Prci12g2047 309 MobiDBLite consensus disorder prediction 121 136 - -
Prci12g2047 309 Pfam AUX/IAA family 39 297 IPR033389 -
Prci12g2047 309 MobiDBLite consensus disorder prediction 121 142 - -
Prci12g2047 309 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 36 295 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2047 Prci-Chr12 38041883 38046007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2047 192 303 B3 DNA Binding Superfamily AT4G23980 34.821 4.48e-15 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Prci12g2047 AUX_IAA 2e-71 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2047 K14484 - gmx:100804593 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci12g2047 12 38041883 38046007 Prci12g2047 12 38041883 38046007 ECH