Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2027 ATGGCAATGTCCTGCAAGGATGGTAAAATAGGACTGGACAACGGTAAGTATGTCCGTTATACACCTGAGCAGGTTGAAGCCCTTGAGAGGCTTTATCACGAATGCCCCAAACCTACTTCCATTCGTCGCCAGCAGCTTATCCGCGAGTGCCCAATTCTCTCAAACATTGAGCCGAAGCAAATTAAAGTTTGGTTCCAGAACAGAAGATGTAGGGAGAAGCAGAGAAAAGAGGCTTTACGCCTTCAAGCAGTTAATAGGAAGCTGACGGCCTTGAACAAGCTCTTGATGGAGGAGAATGATAGGTTACAGAAGCAGGTGTCTCAATTGGTGTACGAAAATGGCTATTTTCGTCAAAACCCACAAAATACAACACTTGCAACTAAGGACACAAGCTGTGAATCTGCGGTGACGAGTGGTCAACAGAGTTTGACAGCACAGCATCCCCCTAGGGATGCGAGTCCTGCAGGACTTTTGTCCATAGCAGAAGAAACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAGATGCCTGGAATGAAGGTTGTGGAAATACTCAAAGACCGGCCTTCATGGTTTCGTGATTGCCGAGCTGTTGATGTTCTCAATGTGCTGCCCACAGCTAATGGTGGAACCATAGAGCTGCTTTATATGCAGCTCTATGCGCCAACAACACTGGCGCCTGCTCGTGACTTTTGGTTGTTGCGCTACACATCTGTTTTAGAAGATGGCAGCCTTGTGGTCTGTGAGAGGTCTCTTAAAAATACTCAAAATGGTCCAAGCATGCCACCTGTGCAGCATTTTGTGAGAGCAGAGATGCTTCCTAGTGGGTACTTGATAAGACCTTGTGAAGGTGGTGGTTCTATCATACACATTGTTGACCACATGGATTTGGAGCCATGGAGTGTGCCTGAAGTACTGCGTCCATTGTATGAATCATCAACAGTGATGGCTCAGAAGACAACCATGACGGCCCTACGCCAGCTTAGACAGATATCTCAAGAGGTCTCTCAGTCTAATGTCAATGGGTGGGGCAGACGCCCTGCAGCTTTAAGAGCACTCAGCCAGCGATTGAGCAGGGGTTTCAATGAGGCTCTAAATGGGTTTACTGATGAAGGATGGTCAATGATTGGCAATGATGGTGTAGATGATGTTATGGTTCTGGTGAATACATCTCCTGACAAATTAATGGGTTTAAATCTCTCCTTTGCAAATGGATTTCCATCTGTCAGCAATGCAGTCTTATGTGCCAAAGCATCAATGCTGTTGCAGAATGTGCCTCCTGCCATTCTCCTCAGGTTTTTGAGGGAGCATAGATCTGAATGGGCAGACAACAACATGGATGCTTACTCAGCTGCTGCCATTAAAGTTGGTCCTTGTAGCTTACCAGGATCTCGTGTTGGAAACTATGGAGGTCAAGTTATACTTCCCCTTGCCCACACTATTGAGCATGAAGAGCTTCTGGAAGTCATTAAACTGGATGGAATAGCTCATTCTTCTGAGGACATGATAATGGCAAGAGAGCTGTTTCTTTTGCAACTCTGTGGTGGGATGGATGAGAATTCTTTTGGCACCTGTGCTGAGCTTATATTTGCTCCAATTGATGCATCGTTTGCTGATGATGCCCCACTTTTACCTTCAGGATTTCGCATTATTCCTCTTGATCCTGGGAAGGAAGCCTCTAGCCCAAATCGAACCTTGACCTTGCATCTTCGCTGA 1734 0.4619 MAMSCKDGKIGLDNGKYVRYTPEQVEALERLYHECPKPTSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEALRLQAVNRKLTALNKLLMEENDRLQKQVSQLVYENGYFRQNPQNTTLATKDTSCESAVTSGQQSLTAQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKVVEILKDRPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVMAQKTTMTALRQLRQISQEVSQSNVNGWGRRPAALRALSQRLSRGFNEALNGFTDEGWSMIGNDGVDDVMVLVNTSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAIKVGPCSLPGSRVGNYGGQVILPLAHTIEHEELLEVIKLDGIAHSSEDMIMARELFLLQLCGGMDENSFGTCAELIFAPIDASFADDAPLLPSGFRIIPLDPGKEASSPNRTLTLHLR 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2027 577 CDD bZIP 68 107 - -
Prci12g2027 577 Gene3D - 172 347 IPR023393 -
Prci12g2027 577 SMART START_1 129 337 IPR002913 GO:0008289
Prci12g2027 577 SMART HOX_1 13 79 IPR001356 GO:0003677
Prci12g2027 577 ProSiteProfiles START domain profile. 171 333 IPR002913 GO:0008289
Prci12g2027 577 FunFam Homeobox-leucine zipper protein REVOLUTA 16 71 - -
Prci12g2027 577 SUPERFAMILY Homeodomain-like 14 78 IPR009057 -
Prci12g2027 577 Coils Coil 81 112 - -
Prci12g2027 577 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Prci12g2027 577 SUPERFAMILY Bet v1-like 151 338 - -
Prci12g2027 577 Pfam START domain 180 336 IPR002913 GO:0008289
Prci12g2027 577 CDD homeodomain 16 76 IPR001356 GO:0003677
Prci12g2027 577 Gene3D - 12 80 - -
Prci12g2027 577 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 186 575 IPR044830 GO:0003700
Prci12g2027 577 Pfam Homeodomain 16 74 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2027 Prci-Chr12 37830308 37836042 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2027 1 574 Homeobox Transcription Factor Family AT1G52150 80.624 0.0 1001
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci12g2027 START 3.4e-40 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2027 K09338 - cave:132186143 1059.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g0842 13 7131602 7137155 Prci12g2027 12 37830308 37836042 CCT
Prci12g2027 12 37830308 37836042 Prci12g2027 12 37830308 37836042 ECH